Wall clock time and date at job start Sun Mar 29 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48504 * 109.47233 * 240.00041 * 3 2 1 5 5 H 1.48505 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99869 * 3 2 1 7 7 C 1.37872 * 120.00657 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46992 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99858 * 180.02562 * 12 11 10 14 14 O 1.21503 * 119.99892 * 359.97438 * 13 12 11 15 15 C 1.48329 * 119.99999 * 180.27206 * 13 12 11 16 16 C 1.42268 * 126.93781 * 179.43261 * 15 13 12 17 17 C 1.35318 * 103.92043 * 179.85802 * 16 15 13 18 18 O 1.34013 * 106.67050 * 0.40002 * 17 16 15 19 19 N 1.20905 * 111.83953 * 359.72964 * 18 17 16 20 20 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47477 * 59.99648 * 9 7 2 22 22 H 1.08997 * 109.47150 * 299.99542 * 9 7 2 23 23 H 1.08993 * 109.47616 * 60.00195 * 10 9 7 24 24 H 1.09005 * 109.47129 * 299.99239 * 10 9 7 25 25 H 1.08998 * 109.47524 * 59.99606 * 11 10 9 26 26 H 1.08997 * 109.47093 * 299.99507 * 11 10 9 27 27 H 0.96991 * 120.00424 * 359.97438 * 12 11 10 28 28 H 1.08006 * 128.04186 * 0.02562 * 16 15 13 29 29 H 1.08001 * 126.66415 * 180.13247 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6619 0.0018 11 6 1.4806 -4.9870 0.0012 12 7 2.4327 -6.1005 0.0018 13 6 1.9835 -7.3712 0.0009 14 8 0.7890 -7.5933 0.0000 15 6 2.9475 -8.4985 0.0076 16 6 2.6388 -9.8873 0.0188 17 6 3.8503 -10.4901 0.0178 18 8 4.7664 -9.5119 0.0158 19 7 4.2547 -8.4165 0.0102 20 1 -0.4850 0.8399 -0.0004 21 1 0.6249 -2.5571 -0.8896 22 1 0.6243 -2.5567 0.8903 23 1 2.8715 -3.6038 0.8922 24 1 2.8728 -3.6046 -0.8878 25 1 0.8549 -5.0450 -0.8894 26 1 0.8530 -5.0447 0.8905 27 1 3.3863 -5.9232 0.0021 28 1 1.6641 -10.3524 0.0240 29 1 4.0418 -11.5530 0.0225 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070650180.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:50 Heat of formation + Delta-G solvation = 10.559689 kcal Electronic energy + Delta-G solvation = -14261.122628 eV Core-core repulsion = 11573.375275 eV Total energy + Delta-G solvation = -2687.747353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.31317 -39.48909 -35.55091 -34.19976 -33.36235 -32.11945 -31.10391 -27.14355 -24.82279 -23.22466 -22.75051 -20.80502 -20.21270 -18.53170 -17.97518 -16.86901 -16.44741 -15.51396 -15.35890 -14.66276 -14.46439 -13.91280 -13.73798 -13.48337 -12.29687 -11.99774 -11.82485 -11.81747 -10.89775 -10.77881 -10.65422 -10.65228 -10.30472 -10.04352 -9.89373 -9.46041 -9.15262 -8.92554 -8.37581 -6.02314 -4.05561 0.95541 1.48495 2.81295 3.08199 3.14573 3.32343 3.36898 3.39196 3.83603 4.43443 4.48016 4.78110 5.04804 5.18822 5.33337 5.58370 5.66968 5.71506 6.10238 6.32772 6.55206 6.75582 6.95872 7.46261 7.61792 7.73950 7.80723 7.95871 8.13464 8.37143 9.00666 9.58628 11.08899 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.067525 B = 0.004195 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.563591 B = 6672.416675 C = 7061.222264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.707 5.707 13 C 0.590 3.410 14 O -0.527 6.527 15 C -0.025 4.025 16 C -0.185 4.185 17 C -0.063 4.063 18 O 0.120 5.880 19 N -0.332 5.332 20 H 0.262 0.738 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.405 0.595 28 H 0.181 0.819 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.845 -20.053 0.037 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.358 5.358 13 C 0.373 3.627 14 O -0.402 6.402 15 C -0.185 4.185 16 C -0.207 4.207 17 C -0.144 4.144 18 O 0.045 5.955 19 N -0.033 5.033 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.240 0.760 28 H 0.199 0.801 29 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.611 -18.969 0.036 20.439 hybrid contribution 0.170 0.404 0.000 0.438 sum 7.781 -18.565 0.035 20.130 Atomic orbital electron populations 1.69951 1.06050 1.26831 1.50444 1.25031 0.94878 0.99322 0.95239 0.86626 0.79546 0.83019 0.78605 1.20235 1.21249 1.20241 1.21161 0.92992 0.90913 1.51112 0.92656 1.19027 0.93797 0.90764 0.97717 1.21915 0.99851 0.93075 1.01138 1.21789 0.91724 0.84753 1.02434 1.46126 1.11613 1.05281 1.72777 1.16931 0.86494 0.81665 0.77605 1.90805 1.14881 1.84344 1.50137 1.23769 0.90944 0.96329 1.07425 1.22807 1.00907 0.91336 1.05665 1.26052 0.87427 0.96881 1.04006 1.84802 1.34821 1.10266 1.65624 1.74195 1.10078 1.03267 1.15739 0.92855 0.96193 0.96201 0.92547 0.92558 0.91241 0.91232 0.76013 0.80142 0.75934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 15 10 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 15 11 C 0.11 2.07 5.67 -4.04 -0.02 2.05 15 12 N -0.71 -11.17 5.55 -61.09 -0.34 -11.51 15 13 C 0.59 9.53 7.85 -12.11 -0.10 9.44 15 14 O -0.53 -9.99 16.95 5.36 0.09 -9.90 15 15 C -0.03 -0.33 7.19 -82.53 -0.59 -0.92 15 16 C -0.18 -1.77 10.99 -39.08 -0.43 -2.20 15 17 C -0.06 -0.41 12.28 29.69 0.36 -0.05 15 18 O 0.12 1.15 11.18 17.25 0.19 1.34 15 19 N -0.33 -4.11 11.84 33.29 0.39 -3.71 15 20 H 0.26 7.44 8.31 -40.82 -0.34 7.11 15 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.41 5.71 8.23 -40.82 -0.34 5.38 15 28 H 0.18 1.45 8.06 -52.48 -0.42 1.02 15 29 H 0.22 0.29 8.06 -52.49 -0.42 -0.14 15 LS Contribution 267.71 15.07 4.03 4.03 Total: -1.00 -32.98 267.71 -4.64 -37.62 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.26 Total: -1.05 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.47 Total: -7.28 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.79 Total: -41.38 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.28 Total: -8.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.98 -4.64 -37.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650180.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.176 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds