Wall clock time and date at job start Sun Mar 29 2020 21:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.38799 * 120.09469 * 359.97438 * 3 2 1 5 5 C 1.38197 * 119.97035 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.17294 * 0.02562 * 5 4 3 7 7 C 1.38309 * 120.18741 * 359.97438 * 6 5 4 8 8 C 1.38489 * 120.02137 * 359.74374 * 7 6 5 9 9 O 1.36008 * 120.08172 * 180.27168 * 8 7 6 10 10 C 1.42898 * 117.00211 * 0.26007 * 9 8 7 11 11 C 1.50696 * 109.47464 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00094 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00235 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00062 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47059 * 90.00365 * 15 13 11 17 17 H 1.48501 * 109.47366 * 210.00424 * 15 13 11 18 18 H 1.48498 * 109.47457 * 330.00470 * 15 13 11 19 19 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 21 21 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 22 22 H 1.07998 * 120.01287 * 359.95616 * 4 3 2 23 23 H 1.08005 * 119.91295 * 179.97438 * 5 4 3 24 24 H 1.07997 * 119.91100 * 179.97438 * 6 5 4 25 25 H 1.07996 * 119.98957 * 179.97438 * 7 6 5 26 26 H 1.09005 * 109.47268 * 299.99953 * 10 9 8 27 27 H 1.08994 * 109.47381 * 59.99484 * 10 9 8 28 28 H 0.96999 * 120.00158 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1968 2.6651 -0.0005 5 6 1.5106 4.0110 0.0000 6 6 2.8325 4.4164 0.0005 7 6 3.8479 3.4774 0.0011 8 6 3.5424 2.1266 0.0064 9 8 4.5400 1.2021 0.0126 10 6 5.8813 1.6950 0.0189 11 6 6.8429 0.5347 0.0244 12 1 6.4673 -0.4780 0.0237 13 6 8.2021 0.7658 0.0315 14 7 9.0413 -0.2469 0.0369 15 14 8.8518 2.5171 0.0336 16 1 9.0165 2.9823 1.4341 17 1 10.1644 2.5590 -0.6595 18 1 7.8909 3.4024 -0.6723 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.1634 2.3513 -0.0017 23 1 0.7211 4.7481 -0.0008 24 1 3.0728 5.4693 0.0005 25 1 4.8793 3.7976 0.0011 26 1 6.0497 2.3016 -0.8710 27 1 6.0406 2.3036 0.9089 28 1 9.9975 -0.0843 0.0415 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082504215.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:47 Heat of formation + Delta-G solvation = -14.761640 kcal Electronic energy + Delta-G solvation = -12760.312527 eV Core-core repulsion = 10481.927279 eV Total energy + Delta-G solvation = -2278.385248 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48318 -36.82606 -32.83975 -31.15337 -29.93474 -28.73500 -28.02901 -23.34387 -22.37425 -21.04671 -18.18570 -16.77225 -16.54609 -15.47020 -14.99455 -14.95362 -14.33064 -13.96900 -13.82473 -13.64760 -12.86021 -12.43992 -12.40403 -12.21557 -11.59069 -11.15284 -11.12318 -10.81441 -10.29761 -10.02729 -9.84215 -9.48026 -9.33800 -8.74563 -8.09459 -6.90686 -6.22836 -4.24653 1.41400 1.72759 1.79213 2.73528 3.17209 3.23567 3.24660 3.95226 4.07671 4.24660 5.01942 5.07322 5.08984 5.09948 5.19818 5.41165 5.51272 5.67995 5.82399 6.00006 6.28473 6.39058 6.57113 6.69396 6.71043 7.01408 7.37831 7.94801 8.49613 8.87925 9.32808 10.89555 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.034338 B = 0.007974 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.237054 B = 3510.519574 C = 4305.304923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 S -0.082 6.082 3 C -0.135 4.135 4 C -0.098 4.098 5 C -0.159 4.159 6 C -0.083 4.083 7 C -0.201 4.201 8 C 0.168 3.832 9 O -0.291 6.291 10 C 0.167 3.833 11 C -0.527 4.527 12 H 0.088 0.912 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.873 3.127 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.265 1.265 19 H 0.104 0.896 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.123 0.877 23 H 0.120 0.880 24 H 0.121 0.879 25 H 0.133 0.867 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 7.419 -0.083 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.160 5.840 3 C -0.248 4.248 4 C -0.123 4.123 5 C -0.179 4.179 6 C -0.104 4.104 7 C -0.221 4.221 8 C 0.115 3.885 9 O -0.203 6.203 10 C 0.093 3.907 11 C -0.564 4.564 12 H 0.106 0.894 13 C -0.124 4.124 14 N -0.525 5.525 15 Si 0.698 3.302 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.190 1.190 19 H 0.122 0.878 20 H 0.097 0.903 21 H 0.097 0.903 22 H 0.141 0.859 23 H 0.138 0.862 24 H 0.139 0.861 25 H 0.151 0.849 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.558 6.057 -0.084 15.769 hybrid contribution -0.186 2.284 0.016 2.292 sum -14.744 8.342 -0.068 16.941 Atomic orbital electron populations 1.23704 0.97416 1.06563 1.04939 1.86057 1.02857 1.02343 1.92788 1.21001 0.93580 0.97564 1.12617 1.20868 0.97252 0.92837 1.01293 1.20775 0.96329 0.95010 1.05758 1.20932 0.92407 0.98959 0.98087 1.21322 1.00728 0.91889 1.08210 1.18676 0.87931 0.88830 0.93077 1.86237 1.15758 1.32723 1.85589 1.21048 0.76365 0.97425 0.95825 1.20757 0.89339 0.93815 1.52524 0.89433 1.24689 0.96138 0.97304 0.94317 1.69850 1.02888 1.30492 1.49233 0.86904 0.79199 0.85024 0.79024 1.19626 1.20420 1.18976 0.87770 0.90287 0.90280 0.85872 0.86221 0.86053 0.84914 0.96284 0.96744 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.15 101.05 0.92 -0.76 15 2 S -0.08 -1.37 22.05 -107.50 -2.37 -3.74 15 3 C -0.13 -2.40 6.12 -38.95 -0.24 -2.64 15 4 C -0.10 -1.42 9.36 -39.39 -0.37 -1.78 15 5 C -0.16 -2.12 10.04 -39.59 -0.40 -2.52 15 6 C -0.08 -1.21 10.04 -39.55 -0.40 -1.61 15 7 C -0.20 -3.61 9.04 -39.46 -0.36 -3.97 15 8 C 0.17 3.43 6.69 -39.07 -0.26 3.17 15 9 O -0.29 -7.07 9.49 -19.77 -0.19 -7.25 15 10 C 0.17 4.20 3.56 36.00 0.13 4.32 15 11 C -0.53 -15.44 9.99 -34.44 -0.34 -15.78 15 12 H 0.09 2.82 8.06 -52.48 -0.42 2.40 15 13 C 0.08 2.27 5.47 -17.82 -0.10 2.17 15 14 N -0.89 -26.89 13.96 55.43 0.77 -26.11 15 15 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 15 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 18 H -0.27 -5.97 6.54 56.52 0.37 -5.60 15 19 H 0.10 0.93 8.14 -51.92 -0.42 0.51 15 20 H 0.08 0.76 7.75 -51.92 -0.40 0.35 15 21 H 0.08 0.76 7.75 -51.92 -0.40 0.35 15 22 H 0.12 1.41 5.88 -52.49 -0.31 1.10 15 23 H 0.12 1.22 8.06 -52.48 -0.42 0.80 15 24 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 25 H 0.13 2.38 6.30 -52.49 -0.33 2.05 15 26 H 0.02 0.47 6.71 -51.93 -0.35 0.12 15 27 H 0.01 0.36 7.10 -51.93 -0.37 -0.01 15 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 255.28 15.07 3.85 3.85 Total: -1.00 -31.30 255.28 -7.03 -38.33 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -3.02 Total: -1.75 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.41 Total: -19.40 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.77 Total: -26.11 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.19 Total: -7.25 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.37 Total: -3.74 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.30 -7.03 -38.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082504215.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.569 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds