Wall clock time and date at job start Sun Mar 29 2020 22:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36813 * 120.00082 * 2 1 4 4 H 1.07999 * 119.99917 * 190.65007 * 3 2 1 5 5 C 1.39084 * 119.99910 * 10.64425 * 3 2 1 6 6 N 1.31333 * 120.00258 * 9.04297 * 5 3 2 7 7 Si 1.86810 * 119.99753 * 189.03708 * 5 3 2 8 8 H 1.48500 * 109.47069 * 0.02562 * 7 5 3 9 9 H 1.48491 * 109.46938 * 120.00487 * 7 5 3 10 10 H 1.48502 * 109.46894 * 240.00396 * 7 5 3 11 11 C 1.34777 * 119.99762 * 180.02562 * 2 1 3 12 12 O 1.21585 * 119.99841 * 5.17116 * 11 2 1 13 13 C 1.47846 * 120.00091 * 185.17673 * 11 2 1 14 14 C 1.39990 * 120.94752 * 43.08844 * 13 11 2 15 15 C 1.38004 * 119.02691 * 180.25588 * 14 13 11 16 16 N 1.31885 * 120.98431 * 359.74750 * 15 14 13 17 17 C 1.31745 * 122.11044 * 0.02562 * 16 15 14 18 18 C 1.38487 * 120.85917 * 0.02562 * 17 16 15 19 19 F 1.35097 * 120.54254 * 179.97438 * 18 17 16 20 20 H 1.08995 * 109.47457 * 174.63803 * 1 2 3 21 21 H 1.09004 * 109.46524 * 294.63830 * 1 2 3 22 22 H 1.08997 * 109.46871 * 54.62870 * 1 2 3 23 23 H 0.97002 * 119.99908 * 179.97438 * 6 5 3 24 24 H 1.08003 * 120.48881 * 0.02562 * 14 13 11 25 25 H 1.07998 * 119.50982 * 179.77456 * 15 14 13 26 26 H 1.08002 * 119.56975 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1848 0.0000 4 1 3.2152 1.1928 -0.1729 5 6 1.4717 2.3790 0.2225 6 7 0.2160 2.3599 0.6070 7 14 2.3479 4.0101 -0.0254 8 1 3.7465 3.7600 -0.4576 9 1 1.6417 4.7979 -1.0673 10 1 2.3519 4.7688 1.2511 11 6 2.1389 -1.1672 -0.0005 12 8 1.5346 -2.2180 -0.0959 13 6 3.6129 -1.1700 0.1150 14 6 4.2650 -0.3328 1.0280 15 6 5.6428 -0.3638 1.0990 16 7 6.3445 -1.1700 0.3264 17 6 5.7741 -1.9782 -0.5438 18 6 4.3968 -2.0131 -0.6838 19 9 3.8186 -2.8440 -1.5786 20 1 -0.3634 -1.0231 -0.0960 21 1 -0.3632 0.4285 0.9342 22 1 -0.3633 0.5949 -0.8380 23 1 -0.2563 3.1927 0.7625 24 1 3.6983 0.3304 1.6649 25 1 6.1541 0.2814 1.7980 26 1 6.3886 -2.6211 -1.1564 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083094074.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:35 Heat of formation + Delta-G solvation = -46.186669 kcal Electronic energy + Delta-G solvation = -15219.270501 eV Core-core repulsion = 12405.602137 eV Total energy + Delta-G solvation = -2813.668364 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.96538 -41.35272 -39.91638 -36.94984 -33.88269 -33.28822 -31.83515 -28.64252 -27.06559 -24.98890 -24.27330 -21.46605 -19.89345 -18.49274 -18.38083 -17.87815 -16.97087 -16.70902 -16.17558 -15.93651 -15.68301 -15.12067 -14.74842 -14.41850 -14.37040 -13.81982 -13.44518 -12.94935 -12.91371 -12.75394 -12.49235 -12.05759 -11.23040 -11.13942 -10.75868 -10.36135 -10.07129 -9.93283 -8.34091 -6.03016 -0.27556 -0.03095 1.38806 1.47111 1.60227 1.86637 2.19636 2.59885 2.74881 3.02499 3.08974 3.48508 3.78615 3.88384 3.92755 4.46267 4.59048 4.83092 4.89945 4.96577 5.05219 5.29446 5.33938 5.58516 5.60351 6.27654 6.76326 6.94580 7.33152 7.75228 8.58802 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.011552 C = 0.008880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.763328 B = 2423.198259 C = 3152.456972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.429 5.429 3 C -0.357 4.357 4 H 0.116 0.884 5 C 0.000 4.000 6 N -0.888 5.888 7 Si 0.996 3.004 8 H -0.254 1.254 9 H -0.280 1.280 10 H -0.269 1.269 11 C 0.457 3.543 12 O -0.639 6.639 13 C -0.102 4.102 14 C -0.105 4.105 15 C 0.091 3.909 16 N -0.461 5.461 17 C 0.080 3.920 18 C 0.053 3.947 19 F -0.136 7.136 20 H 0.036 0.964 21 H 0.082 0.918 22 H 0.045 0.955 23 H 0.276 0.724 24 H 0.156 0.844 25 H 0.206 0.794 26 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 1.181 0.760 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.143 5.143 3 C -0.484 4.484 4 H 0.134 0.866 5 C -0.204 4.204 6 N -0.526 5.526 7 Si 0.818 3.182 8 H -0.178 1.178 9 H -0.206 1.206 10 H -0.194 1.194 11 C 0.247 3.753 12 O -0.530 6.530 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.064 4.064 16 N -0.169 5.169 17 C -0.079 4.079 18 C 0.031 3.969 19 F -0.114 7.114 20 H 0.055 0.945 21 H 0.101 0.899 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.174 0.826 25 H 0.223 0.777 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.749 0.843 0.807 9.819 hybrid contribution -1.534 0.492 -0.462 1.676 sum 8.215 1.336 0.345 8.330 Atomic orbital electron populations 1.21545 0.79512 0.97730 1.03279 1.43858 1.06729 1.05281 1.58438 1.20316 0.95287 0.82935 1.49843 0.86643 1.26296 0.96484 1.03106 0.94479 1.70164 1.11116 1.29317 1.42001 0.84813 0.78813 0.76235 0.78308 1.17775 1.20619 1.19388 1.18166 0.87400 0.83835 0.85892 1.90611 1.70079 1.32366 1.59984 1.20621 0.94190 0.97931 0.98576 1.22601 0.96507 0.96526 0.96911 1.23319 0.89891 0.96135 0.97095 1.67682 1.40023 1.04679 1.04532 1.23188 0.88575 0.98457 0.97649 1.19237 0.93355 0.92745 0.91599 1.91480 1.85424 1.69283 1.65234 0.94507 0.89943 0.93581 0.91313 0.82608 0.77697 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 6.20 8.90 127.77 1.14 7.34 15 2 N -0.43 -22.20 3.02 -662.20 -2.00 -24.20 15 3 C -0.36 -17.23 7.94 84.12 0.67 -16.56 15 4 H 0.12 5.21 5.42 -2.91 -0.02 5.20 15 5 C 0.00 -0.01 5.36 84.97 0.46 0.45 15 6 N -0.89 -43.63 9.80 21.69 0.21 -43.41 15 7 Si 1.00 36.26 29.56 68.60 2.03 38.29 15 8 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15 9 H -0.28 -10.35 7.11 99.48 0.71 -9.64 15 10 H -0.27 -9.43 7.11 99.48 0.71 -8.72 15 11 C 0.46 23.72 7.14 86.79 0.62 24.34 15 12 O -0.64 -37.04 15.84 -3.98 -0.06 -37.10 15 13 C -0.10 -4.35 5.10 -19.85 -0.10 -4.45 15 14 C -0.10 -3.65 7.65 22.64 0.17 -3.48 15 15 C 0.09 2.50 11.17 84.63 0.94 3.45 15 16 N -0.46 -13.28 10.33 -195.85 -2.02 -15.30 15 17 C 0.08 2.38 11.17 84.77 0.95 3.32 15 18 C 0.05 2.06 7.30 22.79 0.17 2.23 15 19 F -0.14 -5.70 16.49 44.97 0.74 -4.96 15 20 H 0.04 1.86 6.91 -2.39 -0.02 1.84 15 21 H 0.08 4.25 6.52 -2.38 -0.02 4.24 15 22 H 0.05 2.34 7.68 -2.39 -0.02 2.32 15 23 H 0.28 12.66 8.31 -92.71 -0.77 11.89 15 24 H 0.16 5.47 6.93 -2.91 -0.02 5.45 15 25 H 0.21 3.77 8.06 -2.91 -0.02 3.75 15 26 H 0.20 4.35 8.06 -2.91 -0.02 4.33 15 Total: -1.00 -62.57 235.97 5.12 -57.45 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.22 Total: 12.60 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.01 Total: 16.64 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.81 Total: -82.92 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.06 Total: -37.10 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.74 Total: -4.96 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -62.57 5.12 -57.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083094074.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.263 kcal (2) G-P(sol) polarization free energy of solvation -62.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds