Wall clock time and date at job start Sun Mar 29 2020 21:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00303 * 2 1 4 4 C 1.53001 * 109.46774 * 286.97529 * 3 2 1 5 5 C 1.50700 * 115.55374 * 65.89338 * 4 3 2 6 6 H 1.07997 * 120.00228 * 215.31190 * 5 4 3 7 7 C 1.37885 * 119.99917 * 35.02817 * 5 4 3 8 8 N 1.31516 * 119.99749 * 10.73609 * 7 5 4 9 9 Si 1.86799 * 119.99917 * 190.73356 * 7 5 4 10 10 H 1.48497 * 109.47190 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46960 * 119.99903 * 9 7 5 12 12 H 1.48496 * 109.47079 * 239.99881 * 9 7 5 13 13 C 1.53003 * 117.49756 * 211.55933 * 4 3 2 14 14 C 1.53001 * 117.49957 * 280.22088 * 4 3 2 15 15 C 1.46899 * 110.99588 * 123.95041 * 2 1 3 16 16 C 1.54272 * 110.03136 * 179.68327 * 15 2 1 17 17 C 1.54886 * 104.19567 * 217.10368 * 16 15 2 18 18 C 1.54894 * 102.74951 * 37.94290 * 17 16 15 19 19 C 1.53873 * 110.03572 * 62.51750 * 15 2 1 20 20 H 1.08997 * 109.46713 * 68.90507 * 1 2 3 21 21 H 1.08995 * 109.47196 * 188.90662 * 1 2 3 22 22 H 1.09005 * 109.47180 * 308.90785 * 1 2 3 23 23 H 1.08996 * 109.47180 * 166.97426 * 3 2 1 24 24 H 1.09005 * 109.47249 * 46.97140 * 3 2 1 25 25 H 0.96995 * 119.99246 * 184.92106 * 8 7 5 26 26 H 1.09000 * 117.50132 * 214.99957 * 13 4 3 27 27 H 1.09001 * 117.49782 * 0.02676 * 13 4 3 28 28 H 1.08998 * 117.49238 * 359.97438 * 14 4 3 29 29 H 1.08993 * 117.50020 * 144.97441 * 14 4 3 30 30 H 1.09003 * 110.02170 * 301.12479 * 15 2 1 31 31 H 1.08992 * 110.48447 * 335.78397 * 16 15 2 32 32 H 1.09003 * 110.48606 * 98.42622 * 16 15 2 33 33 H 1.08999 * 110.76016 * 279.62843 * 17 16 15 34 34 H 1.08997 * 110.91703 * 156.32832 * 17 16 15 35 35 H 1.08996 * 110.48763 * 203.38025 * 18 17 16 36 36 H 1.09000 * 110.48443 * 80.73044 * 18 17 16 37 37 H 1.08999 * 110.03427 * 238.57241 * 19 15 2 38 38 H 1.09002 * 110.02658 * 359.97438 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7851 1.9984 -1.3797 5 6 0.3495 2.2208 -1.7806 6 1 0.0520 2.1005 -2.8117 7 6 -0.5852 2.5722 -0.8298 8 7 -0.1965 2.9188 0.3779 9 14 -2.4036 2.5560 -1.2571 10 1 -2.5764 2.1320 -2.6697 11 1 -3.1132 1.6042 -0.3649 12 1 -2.9668 3.9180 -1.0760 13 6 2.8181 3.0219 -1.8555 14 6 2.7773 1.6265 -2.4835 15 6 1.9954 -0.7659 1.1377 16 6 3.5378 -0.7581 1.1116 17 6 3.9331 -2.1754 1.5954 18 6 2.8552 -3.0735 0.9391 19 6 1.5614 -2.2381 1.0280 20 1 -0.3632 0.3699 -0.9588 21 1 -0.3633 -1.0152 0.1591 22 1 -0.3634 0.6455 0.7997 23 1 3.0604 1.3517 0.2316 24 1 1.4711 1.9620 0.7513 25 1 -0.8555 3.0968 1.0669 26 1 2.4593 3.8561 -2.4584 27 1 3.6477 3.2483 -1.1857 28 1 3.5801 0.9355 -2.2265 29 1 2.3916 1.5422 -3.4994 30 1 1.6348 -0.3392 2.0737 31 1 3.9014 -0.5855 0.0987 32 1 3.9270 -0.0005 1.7919 33 1 3.8812 -2.2411 2.6822 34 1 4.9281 -2.4442 1.2407 35 1 2.7463 -4.0057 1.4934 36 1 3.1086 -3.2748 -0.1018 37 1 0.9909 -2.5260 1.9110 38 1 0.9599 -2.3841 0.1308 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:29 Heat of formation + Delta-G solvation = 29.307909 kcal Electronic energy + Delta-G solvation = -16489.436470 eV Core-core repulsion = 14139.594201 eV Total energy + Delta-G solvation = -2349.842269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.52808 -36.50680 -33.68460 -32.18649 -28.68543 -27.23716 -25.85943 -25.54180 -22.27206 -21.01139 -20.27512 -18.91738 -18.57343 -16.21919 -15.54465 -15.09720 -14.73627 -13.91951 -13.67360 -13.17941 -12.89196 -12.77176 -12.34351 -11.63432 -11.41266 -11.00883 -10.93467 -10.76407 -10.69086 -10.60228 -10.41539 -10.35433 -10.27321 -10.10690 -10.03573 -9.81426 -9.15900 -8.88794 -8.56229 -7.98642 -7.03744 -5.96117 -4.00983 3.23611 3.33970 3.37920 4.35551 4.84959 4.98889 5.06796 5.10561 5.37446 5.72085 5.79922 5.90574 5.96127 5.96795 6.15367 6.18788 6.22885 6.24746 6.42844 6.47644 6.57092 6.63037 6.67468 6.75407 6.79811 6.87342 6.89096 7.06376 7.08267 7.36611 7.45157 7.52086 7.62790 8.01758 8.39340 8.44191 8.53257 8.91822 9.50567 10.94744 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.010187 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.370837 B = 2748.046637 C = 3308.517440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.078 3.922 4 C 0.063 3.937 5 C -0.473 4.473 6 H 0.059 0.941 7 C 0.074 3.926 8 N -0.877 5.877 9 Si 0.878 3.122 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.285 1.285 13 C -0.208 4.208 14 C -0.199 4.199 15 C 0.079 3.921 16 C -0.114 4.114 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.117 4.117 20 H 0.100 0.900 21 H 0.026 0.974 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.097 0.903 25 H 0.259 0.741 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -7.729 2.802 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.049 4.049 4 C 0.063 3.937 5 C -0.511 4.511 6 H 0.077 0.923 7 C -0.128 4.128 8 N -0.515 5.515 9 Si 0.705 3.295 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.211 1.211 13 C -0.247 4.247 14 C -0.237 4.237 15 C -0.030 4.030 16 C -0.152 4.152 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.155 4.155 20 H 0.118 0.882 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.195 -7.828 2.538 9.236 hybrid contribution -1.194 0.456 0.583 1.405 sum 3.001 -7.372 3.121 8.549 Atomic orbital electron populations 1.22813 0.87732 0.97462 1.04742 1.62115 1.08153 1.15208 1.38818 1.21965 0.96060 0.87405 0.99457 1.18873 0.90099 0.94392 0.90373 1.20591 0.91418 1.44597 0.94459 0.92310 1.24903 0.98571 0.93995 0.95296 1.69862 1.33044 1.45552 1.03083 0.86782 0.85967 0.77801 0.78979 1.19496 1.20541 1.21072 1.22961 1.04023 0.92546 1.05174 1.22737 1.04492 0.97568 0.98865 1.22200 0.94167 0.93650 0.93029 1.22423 0.95479 0.95714 1.01610 1.22463 0.98193 0.95879 0.99613 1.22288 0.95409 0.97408 1.00505 1.22219 0.97230 0.94559 1.01521 0.88230 0.95545 0.95068 0.95178 0.88606 0.93080 0.90759 0.92045 0.91526 0.91220 0.95437 0.90531 0.92573 0.92207 0.92142 0.92628 0.91679 0.92974 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 7.71 60.07 0.46 0.92 16 2 N -0.52 -11.28 4.47 -233.53 -1.04 -12.32 16 3 C 0.08 1.84 4.51 -3.82 -0.02 1.83 16 4 C 0.06 1.57 1.99 -155.66 -0.31 1.26 16 5 C -0.47 -12.60 7.05 -34.44 -0.24 -12.85 16 6 H 0.06 1.60 7.84 -52.49 -0.41 1.18 16 7 C 0.07 1.92 2.97 -17.82 -0.05 1.87 16 8 N -0.88 -23.45 9.26 55.43 0.51 -22.93 16 9 Si 0.88 20.39 28.95 -169.99 -4.92 15.47 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.21 -4.85 9.92 -26.69 -0.26 -5.11 16 14 C -0.20 -4.50 9.96 -26.69 -0.27 -4.77 16 15 C 0.08 1.46 2.67 -66.59 -0.18 1.28 16 16 C -0.11 -1.88 4.92 -25.07 -0.12 -2.00 16 17 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 18 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 19 C -0.12 -1.87 5.77 -25.61 -0.15 -2.02 16 20 H 0.10 2.45 4.38 -51.93 -0.23 2.23 16 21 H 0.03 0.53 6.24 -51.93 -0.32 0.20 16 22 H 0.03 0.75 6.35 -51.93 -0.33 0.42 16 23 H 0.03 0.67 6.19 -51.93 -0.32 0.35 16 24 H 0.10 2.53 5.15 -51.93 -0.27 2.26 16 25 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 26 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.36 7.66 -51.93 -0.40 0.96 16 32 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.28 6.67 -51.93 -0.35 0.94 16 LS Contribution 283.50 15.07 4.27 4.27 Total: -1.00 -26.25 283.50 -9.07 -35.32 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.41 Total: 3.38 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -1.48 Total: -23.19 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.53 Total: -35.25 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.92 Total: 15.47 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.25 -9.07 -35.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.630 kcal (2) G-P(sol) polarization free energy of solvation -26.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds