Wall clock time and date at job start Sun Mar 29 2020 22:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00423 * 2 1 4 4 H 1.48493 * 109.47214 * 240.00079 * 3 2 1 5 5 H 1.48509 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46985 * 119.99598 * 3 2 1 7 7 C 1.37883 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99707 * 171.18104 * 7 2 1 9 9 C 1.50703 * 119.99991 * 351.18652 * 7 2 1 10 10 C 1.53002 * 115.54760 * 294.56067 * 9 7 2 11 11 N 1.46503 * 109.46731 * 280.36199 * 10 9 7 12 12 C 1.34775 * 124.17330 * 85.37894 * 11 10 9 13 13 O 1.21232 * 127.15887 * 359.97438 * 12 11 10 14 14 C 1.51578 * 105.68224 * 179.72058 * 12 11 10 15 15 N 1.47312 * 103.59753 * 0.24238 * 14 12 11 16 16 C 1.33786 * 124.18157 * 265.52473 * 11 10 9 17 17 O 1.21541 * 123.77111 * 0.07796 * 16 11 10 18 18 C 1.52997 * 117.51845 * 80.25686 * 9 7 2 19 19 C 1.52998 * 117.49744 * 148.88921 * 9 7 2 20 20 H 0.97002 * 119.99900 * 5.03677 * 1 2 3 21 21 H 1.09000 * 109.47183 * 160.36922 * 10 9 7 22 22 H 1.08996 * 109.47450 * 40.36606 * 10 9 7 23 23 H 1.09003 * 110.60054 * 118.76514 * 14 12 11 24 24 H 1.08996 * 110.60462 * 241.55998 * 14 12 11 25 25 H 0.96998 * 126.69576 * 180.02562 * 15 14 12 26 26 H 1.09003 * 117.49870 * 214.97278 * 18 9 7 27 27 H 1.09002 * 117.50320 * 359.97438 * 18 9 7 28 28 H 1.08994 * 117.50178 * 359.97132 * 19 9 7 29 29 H 1.08997 * 117.49531 * 144.98021 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0749 -1.1997 -0.1429 9 6 1.2643 -2.4914 0.2011 10 6 0.6129 -2.6741 1.5734 11 7 1.6285 -3.0876 2.5449 12 6 2.4210 -2.2331 3.2217 13 8 2.4280 -1.0233 3.1441 14 6 3.2973 -3.0990 4.1047 15 7 2.8596 -4.4698 3.7894 16 6 1.8858 -4.3602 2.8677 17 8 1.3019 -5.3109 2.3854 18 6 0.5420 -3.0875 -1.0088 19 6 1.8246 -3.7380 -0.4866 20 1 -0.4850 0.8368 -0.0738 21 1 -0.1612 -3.4389 1.5092 22 1 0.1672 -1.7319 1.8924 23 1 4.3489 -2.9645 3.8514 24 1 3.1255 -2.8716 5.1568 25 1 3.2056 -5.2912 4.1720 26 1 -0.3973 -3.6098 -0.8271 27 1 0.6016 -2.5411 -1.9501 28 1 2.7283 -3.6198 -1.0844 29 1 1.7294 -4.6883 0.0388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862383.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:51 Heat of formation + Delta-G solvation = -14.012032 kcal Electronic energy + Delta-G solvation = -15969.110422 eV Core-core repulsion = 13280.297559 eV Total energy + Delta-G solvation = -2688.812862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.66077 -37.86009 -36.67364 -35.50316 -33.43702 -31.93415 -27.60964 -26.57753 -25.24638 -22.18587 -21.15125 -20.48337 -18.86410 -17.46584 -16.69223 -16.26611 -15.70616 -14.75946 -14.63652 -14.48821 -13.86513 -13.58183 -13.44393 -13.17658 -12.60564 -11.69611 -11.34213 -10.94500 -10.78560 -10.52226 -10.43173 -10.10182 -9.93231 -9.58187 -9.23676 -8.89464 -8.72661 -8.42413 -8.11554 -5.99524 -4.02854 2.27257 2.82355 3.37951 3.41909 3.49786 3.58310 3.67501 4.47751 4.50872 5.16606 5.24147 5.24764 5.46250 5.79130 6.12870 6.26592 6.39834 6.45024 6.69080 6.80572 6.99826 7.06428 7.09282 7.34958 7.50080 7.76497 7.93297 8.10505 8.43996 8.64845 8.93439 9.62391 11.08989 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.029516 B = 0.012491 C = 0.009755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.420591 B = 2241.003519 C = 2869.641110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.488 4.488 8 H 0.054 0.946 9 C 0.030 3.970 10 C 0.160 3.840 11 N -0.558 5.558 12 C 0.515 3.485 13 O -0.445 6.445 14 C 0.060 3.940 15 N -0.739 5.739 16 C 0.700 3.300 17 O -0.555 6.555 18 C -0.161 4.161 19 C -0.207 4.207 20 H 0.261 0.739 21 H 0.066 0.934 22 H 0.104 0.896 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.433 0.567 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 -5.847 8.262 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.123 4.123 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.028 3.972 10 C 0.041 3.959 11 N -0.303 5.303 12 C 0.300 3.700 13 O -0.312 6.312 14 C -0.068 4.068 15 N -0.404 5.404 16 C 0.401 3.599 17 O -0.430 6.430 18 C -0.200 4.200 19 C -0.245 4.245 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.122 0.878 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.276 0.724 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.458 -5.447 7.951 10.619 hybrid contribution 0.681 0.528 0.070 0.865 sum 5.139 -4.919 8.021 10.721 Atomic orbital electron populations 1.69932 1.05941 1.26978 1.49030 1.24859 0.94698 0.98820 0.93887 0.86696 0.79888 0.83067 0.78666 1.20636 1.21398 1.19568 1.20251 0.93072 0.88676 1.50485 0.92735 1.19141 0.98155 0.91755 0.88116 1.21450 0.86539 1.00310 0.87644 1.46446 1.37005 1.06640 1.40194 1.20621 0.80979 0.87779 0.80578 1.90846 1.65866 1.11199 1.63271 1.22458 1.01120 0.81780 1.01421 1.45412 1.40758 1.08557 1.45697 1.15987 0.80498 0.83712 0.79696 1.90941 1.54568 1.39466 1.57995 1.22689 0.93257 1.03504 1.00532 1.22931 0.97555 0.97481 1.06489 0.92896 0.91538 0.87800 0.86837 0.86970 0.72440 0.91661 0.90030 0.90871 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.94 12.60 55.43 0.70 -24.24 15 2 C 0.08 2.24 5.25 -17.82 -0.09 2.14 15 3 Si 0.89 21.95 29.55 -169.99 -5.02 16.93 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 6 H -0.27 -6.79 7.11 56.52 0.40 -6.38 15 7 C -0.49 -13.37 8.61 -34.44 -0.30 -13.66 15 8 H 0.05 1.53 7.83 -52.49 -0.41 1.12 15 9 C 0.03 0.74 1.48 -155.66 -0.23 0.51 15 10 C 0.16 3.72 5.51 -4.04 -0.02 3.70 15 11 N -0.56 -11.20 2.57 -120.73 -0.31 -11.51 15 12 C 0.52 9.59 8.32 -10.55 -0.09 9.50 15 13 O -0.44 -10.01 17.60 5.60 0.10 -9.92 15 14 C 0.06 0.71 7.97 -4.32 -0.03 0.68 15 15 N -0.74 -9.30 6.58 -65.74 -0.43 -9.73 15 16 C 0.70 12.69 8.53 -88.02 -0.75 11.94 15 17 O -0.55 -11.65 16.38 5.33 0.09 -11.56 15 18 C -0.16 -3.85 9.88 -26.73 -0.26 -4.11 15 19 C -0.21 -4.76 9.92 -26.73 -0.27 -5.03 15 20 H 0.26 7.13 8.32 -40.82 -0.34 6.79 15 21 H 0.07 1.50 7.57 -51.93 -0.39 1.11 15 22 H 0.10 2.65 7.24 -51.93 -0.38 2.27 15 23 H 0.11 1.10 8.14 -51.93 -0.42 0.67 15 24 H 0.11 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.43 3.96 8.96 -40.82 -0.37 3.60 15 26 H 0.06 1.47 8.09 -51.93 -0.42 1.05 15 27 H 0.08 2.01 8.14 -51.93 -0.42 1.59 15 28 H 0.07 1.66 8.14 -51.93 -0.42 1.23 15 29 H 0.08 1.71 6.98 -51.93 -0.36 1.35 15 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -32.40 259.65 -6.17 -38.57 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.15 Total: 1.89 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -2.04 Total: 5.66 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.05 Total: -45.48 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.19 Total: -21.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.40 -6.17 -38.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862383.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.557 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds