Wall clock time and date at job start Sun Mar 29 2020 21:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.87535 * 2 1 4 4 C 1.54902 * 110.99034 * 123.84741 * 2 1 3 5 5 N 1.47847 * 104.79649 * 155.15897 * 4 2 1 6 6 C 1.46898 * 111.00200 * 213.63275 * 5 4 2 7 7 C 1.52998 * 109.47310 * 184.79722 * 6 5 4 8 8 C 1.50693 * 115.56500 * 211.75955 * 7 6 5 9 9 H 1.08003 * 120.00428 * 220.27416 * 8 7 6 10 10 C 1.37880 * 119.99893 * 40.27443 * 8 7 6 11 11 N 1.31509 * 120.00124 * 11.11797 * 10 8 7 12 12 Si 1.86797 * 119.99756 * 191.11485 * 10 8 7 13 13 H 1.48504 * 109.47393 * 60.00137 * 12 10 8 14 14 H 1.48505 * 109.47064 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47584 * 300.00085 * 12 10 8 16 16 C 1.52998 * 117.49733 * 357.45027 * 7 6 5 17 17 C 1.52998 * 60.00364 * 107.48856 * 16 7 6 18 18 C 1.47443 * 108.56803 * 335.90447 * 5 4 2 19 19 C 1.54324 * 107.22907 * 0.98560 * 18 5 4 20 20 H 1.09000 * 110.85674 * 263.82984 * 19 18 5 21 21 C 1.53001 * 110.70176 * 140.66496 * 19 18 5 22 22 H 1.09003 * 109.47108 * 297.60774 * 1 2 3 23 23 H 1.08995 * 109.47336 * 57.60418 * 1 2 3 24 24 H 1.08999 * 109.47171 * 177.60988 * 1 2 3 25 25 H 1.09003 * 110.37983 * 36.32866 * 4 2 1 26 26 H 1.08999 * 110.46798 * 274.03503 * 4 2 1 27 27 H 1.08998 * 109.47173 * 64.80054 * 6 5 4 28 28 H 1.09003 * 109.47247 * 304.79828 * 6 5 4 29 29 H 0.97002 * 120.00468 * 174.99618 * 11 10 8 30 30 H 1.09004 * 117.50266 * 214.97605 * 16 7 6 31 31 H 1.09007 * 117.49989 * 0.02562 * 16 7 6 32 32 H 1.08995 * 117.49836 * 252.51391 * 17 16 7 33 33 H 1.08998 * 117.50225 * 107.49112 * 17 16 7 34 34 H 1.09000 * 109.88946 * 120.38896 * 18 5 4 35 35 H 1.08996 * 109.88766 * 241.58365 * 18 5 4 36 36 H 1.08995 * 109.47446 * 306.40335 * 21 19 18 37 37 H 1.09009 * 109.46988 * 66.40416 * 21 19 18 38 38 H 1.08998 * 109.47264 * 186.39692 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0849 -0.8055 1.2011 5 7 3.4313 -1.2418 0.7735 6 6 3.7612 -2.5584 1.3352 7 6 5.2020 -2.9219 0.9708 8 6 5.4739 -4.3921 0.7820 9 1 6.3904 -4.8242 1.1557 10 6 4.5525 -5.1856 0.1321 11 7 3.5474 -4.6337 -0.5119 12 14 4.7319 -7.0446 0.1663 13 1 4.6868 -7.5206 1.5723 14 1 3.6211 -7.6634 -0.6010 15 1 6.0299 -7.4281 -0.4446 16 6 5.9762 -1.9412 0.0879 17 6 6.3199 -2.0685 1.5733 18 6 3.4692 -1.2714 -0.7001 19 6 2.0857 -0.8077 -1.2024 20 1 1.4457 -1.6624 -1.4213 21 6 2.2298 0.0874 -2.4349 22 1 -0.3633 0.4762 0.9107 23 1 -0.3634 0.5506 -0.8677 24 1 -0.3633 -1.0268 -0.0429 25 1 1.4523 -1.6699 1.4032 26 1 2.1544 -0.1721 2.0854 27 1 3.0831 -3.3079 0.9270 28 1 3.6576 -2.5271 2.4199 29 1 2.9408 -5.1863 -1.0293 30 1 6.6823 -2.3594 -0.6296 31 1 5.4593 -1.0368 -0.2331 32 1 6.0288 -1.2481 2.2293 33 1 7.2519 -2.5703 1.8332 34 1 4.2420 -0.5948 -1.0649 35 1 3.6682 -2.2859 -1.0456 36 1 2.9160 0.9046 -2.2123 37 1 2.6210 -0.4992 -3.2662 38 1 1.2553 0.4945 -2.7043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086009936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:54 Heat of formation + Delta-G solvation = 28.865709 kcal Electronic energy + Delta-G solvation = -16403.768549 eV Core-core repulsion = 14053.907105 eV Total energy + Delta-G solvation = -2349.861444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.93484 -36.21064 -32.38237 -32.09505 -30.74240 -26.67227 -25.78508 -25.36332 -22.93012 -21.04578 -20.01933 -19.36699 -18.55607 -16.03340 -15.31991 -14.79278 -14.39351 -14.00001 -13.42176 -13.26109 -12.79175 -12.64596 -12.23643 -11.95156 -11.79688 -11.48857 -11.14659 -11.13501 -10.90811 -10.75030 -10.53099 -10.39591 -10.20512 -10.01729 -9.64446 -9.61063 -9.04994 -8.96324 -8.53235 -7.95839 -7.20994 -5.98685 -4.06762 3.27794 3.32987 3.36699 4.36612 4.91828 5.02145 5.10802 5.19343 5.40501 5.68778 5.74567 5.79028 5.86635 5.90786 6.07072 6.09500 6.23839 6.27735 6.38535 6.41796 6.43657 6.58920 6.62605 6.72395 6.76372 6.91464 6.93801 7.04954 7.22283 7.30227 7.50209 7.59909 7.62607 7.94841 8.15933 8.17775 8.59527 8.91041 9.51419 10.96551 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.009338 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.671494 B = 2997.757396 C = 3341.584643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.074 0.926 4 C 0.049 3.951 5 N -0.530 5.530 6 C 0.076 3.924 7 C 0.053 3.947 8 C -0.485 4.485 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.880 5.880 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.205 4.205 17 C -0.207 4.207 18 C 0.043 3.957 19 C -0.111 4.111 20 H 0.071 0.929 21 C -0.136 4.136 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 7.169 -1.011 8.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.080 4.080 5 N -0.254 5.254 6 C -0.052 4.052 7 C 0.052 3.948 8 C -0.523 4.523 9 H 0.077 0.923 10 C -0.133 4.133 11 N -0.519 5.519 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.242 4.242 17 C -0.244 4.244 18 C -0.084 4.084 19 C -0.131 4.131 20 H 0.090 0.910 21 C -0.193 4.193 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.977 7.424 -0.869 8.980 hybrid contribution -0.401 -1.521 -0.273 1.597 sum -5.378 5.903 -1.141 8.067 Atomic orbital electron populations 1.21706 0.95471 1.01563 1.00875 1.22327 0.94622 0.99223 0.95574 0.90735 1.22959 0.90537 0.97583 0.96885 1.63603 1.24194 1.29456 1.08099 1.22001 0.98624 0.88573 0.95956 1.18929 0.87817 0.90835 0.97191 1.20639 1.03875 0.91257 1.36525 0.92313 1.24951 0.94923 0.98538 0.94912 1.69744 1.16632 1.35102 1.30379 0.86648 0.77624 0.85480 0.78208 1.20195 1.21284 1.20312 1.23374 1.05572 1.03574 0.91720 1.22785 1.01094 1.03830 0.96685 1.23168 0.93466 1.03851 0.87937 1.22481 0.98855 0.97520 0.94222 0.91029 1.21700 1.00621 0.99289 0.97713 0.93090 0.93063 0.92798 0.94311 0.91924 0.89047 0.94529 0.92878 0.91824 0.88937 0.91323 0.91699 0.92203 0.87707 0.92940 0.92848 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.29 37.16 0.35 -1.46 16 2 C -0.10 -1.52 3.08 -88.48 -0.27 -1.80 16 3 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 4 C 0.05 0.87 6.19 -2.30 -0.01 0.86 16 5 N -0.53 -11.10 4.56 -231.25 -1.06 -12.15 16 6 C 0.08 1.81 4.42 -3.83 -0.02 1.79 16 7 C 0.05 1.34 1.86 -155.66 -0.29 1.05 16 8 C -0.49 -13.27 9.01 -34.44 -0.31 -13.58 16 9 H 0.06 1.61 7.84 -52.48 -0.41 1.20 16 10 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 11 N -0.88 -23.50 9.53 55.43 0.53 -22.98 16 12 Si 0.89 20.77 29.55 -169.99 -5.02 15.74 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C -0.20 -4.84 8.44 -26.73 -0.23 -5.07 16 17 C -0.21 -4.79 9.94 -26.73 -0.27 -5.05 16 18 C 0.04 0.88 4.39 -2.83 -0.01 0.87 16 19 C -0.11 -1.89 3.01 -88.79 -0.27 -2.16 16 20 H 0.07 1.31 8.01 -51.93 -0.42 0.89 16 21 C -0.14 -1.94 9.16 37.16 0.34 -1.60 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 25 H 0.04 0.73 7.70 -51.93 -0.40 0.33 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.09 2.40 5.29 -51.93 -0.27 2.13 16 28 H 0.04 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 30 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 2.10 4.23 -51.93 -0.22 1.88 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.21 5.95 -51.93 -0.31 0.90 16 35 H 0.10 2.52 5.54 -51.93 -0.29 2.23 16 36 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 37 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -26.49 289.28 -8.79 -35.28 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.52 Total: 4.17 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -1.08 Total: -24.43 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.53 Total: -35.13 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.49 -8.79 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086009936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.147 kcal (2) G-P(sol) polarization free energy of solvation -26.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds