Wall clock time and date at job start Sun Mar 29 2020 21:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.87535 * 2 1 4 4 C 1.54902 * 110.99034 * 123.84741 * 2 1 3 5 5 N 1.47847 * 104.79649 * 155.15897 * 4 2 1 6 6 C 1.46898 * 111.00200 * 213.63275 * 5 4 2 7 7 C 1.52998 * 109.47310 * 184.79722 * 6 5 4 8 8 C 1.50693 * 115.56500 * 211.75955 * 7 6 5 9 9 H 1.08003 * 120.00428 * 220.27416 * 8 7 6 10 10 C 1.37880 * 119.99893 * 40.27443 * 8 7 6 11 11 N 1.31509 * 120.00124 * 11.11797 * 10 8 7 12 12 Si 1.86797 * 119.99756 * 191.11485 * 10 8 7 13 13 H 1.48504 * 109.47393 * 60.00137 * 12 10 8 14 14 H 1.48505 * 109.47064 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47584 * 300.00085 * 12 10 8 16 16 C 1.52998 * 117.49733 * 357.45027 * 7 6 5 17 17 C 1.52998 * 60.00364 * 107.48856 * 16 7 6 18 18 C 1.47443 * 108.56803 * 335.90447 * 5 4 2 19 19 C 1.54324 * 107.22907 * 0.98560 * 18 5 4 20 20 H 1.09000 * 110.85674 * 263.82984 * 19 18 5 21 21 C 1.53001 * 110.70176 * 140.66496 * 19 18 5 22 22 H 1.09003 * 109.47108 * 297.60774 * 1 2 3 23 23 H 1.08995 * 109.47336 * 57.60418 * 1 2 3 24 24 H 1.08999 * 109.47171 * 177.60988 * 1 2 3 25 25 H 1.09003 * 110.37983 * 36.32866 * 4 2 1 26 26 H 1.08999 * 110.46798 * 274.03503 * 4 2 1 27 27 H 1.08998 * 109.47173 * 64.80054 * 6 5 4 28 28 H 1.09003 * 109.47247 * 304.79828 * 6 5 4 29 29 H 0.97002 * 120.00468 * 174.99618 * 11 10 8 30 30 H 1.09004 * 117.50266 * 214.97605 * 16 7 6 31 31 H 1.09007 * 117.49989 * 0.02562 * 16 7 6 32 32 H 1.08995 * 117.49836 * 252.51391 * 17 16 7 33 33 H 1.08998 * 117.50225 * 107.49112 * 17 16 7 34 34 H 1.09000 * 109.88946 * 120.38896 * 18 5 4 35 35 H 1.08996 * 109.88766 * 241.58365 * 18 5 4 36 36 H 1.08995 * 109.47446 * 306.40335 * 21 19 18 37 37 H 1.09009 * 109.46988 * 66.40416 * 21 19 18 38 38 H 1.08998 * 109.47264 * 186.39692 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0849 -0.8055 1.2011 5 7 3.4313 -1.2418 0.7735 6 6 3.7612 -2.5584 1.3352 7 6 5.2020 -2.9219 0.9708 8 6 5.4739 -4.3921 0.7820 9 1 6.3904 -4.8242 1.1557 10 6 4.5525 -5.1856 0.1321 11 7 3.5474 -4.6337 -0.5119 12 14 4.7319 -7.0446 0.1663 13 1 4.6868 -7.5206 1.5723 14 1 3.6211 -7.6634 -0.6010 15 1 6.0299 -7.4281 -0.4446 16 6 5.9762 -1.9412 0.0879 17 6 6.3199 -2.0685 1.5733 18 6 3.4692 -1.2714 -0.7001 19 6 2.0857 -0.8077 -1.2024 20 1 1.4457 -1.6624 -1.4213 21 6 2.2298 0.0874 -2.4349 22 1 -0.3633 0.4762 0.9107 23 1 -0.3634 0.5506 -0.8677 24 1 -0.3633 -1.0268 -0.0429 25 1 1.4523 -1.6699 1.4032 26 1 2.1544 -0.1721 2.0854 27 1 3.0831 -3.3079 0.9270 28 1 3.6576 -2.5271 2.4199 29 1 2.9408 -5.1863 -1.0293 30 1 6.6823 -2.3594 -0.6296 31 1 5.4593 -1.0368 -0.2331 32 1 6.0288 -1.2481 2.2293 33 1 7.2519 -2.5703 1.8332 34 1 4.2420 -0.5948 -1.0649 35 1 3.6682 -2.2859 -1.0456 36 1 2.9160 0.9046 -2.2123 37 1 2.6210 -0.4992 -3.2662 38 1 1.2553 0.4945 -2.7043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086009936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:54 Heat of formation + Delta-G solvation = 14.957144 kcal Electronic energy + Delta-G solvation = -16404.371669 eV Core-core repulsion = 14053.907105 eV Total energy + Delta-G solvation = -2350.464565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51566 -37.95389 -34.23352 -33.81714 -32.01144 -28.41719 -27.37172 -27.06635 -24.42730 -22.86967 -21.52965 -20.88351 -20.40440 -18.03623 -16.84373 -16.65613 -16.07806 -15.63942 -14.91419 -14.73103 -14.34770 -14.09525 -13.82241 -13.33246 -13.21559 -13.08907 -12.87417 -12.75989 -12.64177 -12.40014 -12.22493 -12.11457 -11.67345 -11.47116 -11.31591 -11.10819 -10.92918 -10.89400 -10.44849 -9.89565 -8.95646 -7.99067 -6.16736 1.40573 1.42983 1.49922 2.40970 3.00514 3.42954 3.71174 3.76692 3.88862 4.05284 4.40473 4.50526 4.61146 4.63587 4.69657 4.73923 4.80396 4.81522 4.87356 4.99528 5.05133 5.09001 5.11311 5.16432 5.21599 5.26273 5.34379 5.45239 5.53020 5.57681 5.58841 5.69024 5.73548 6.01359 6.31554 6.44934 6.62700 6.86652 7.43202 8.91289 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.009338 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.671494 B = 2997.757396 C = 3341.584643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.088 0.912 4 C 0.043 3.957 5 N -0.532 5.532 6 C 0.088 3.912 7 C 0.027 3.973 8 C -0.517 4.517 9 H 0.047 0.953 10 C 0.031 3.969 11 N -0.890 5.890 12 Si 0.951 3.049 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.276 1.276 16 C -0.196 4.196 17 C -0.193 4.193 18 C 0.045 3.955 19 C -0.108 4.108 20 H 0.053 0.947 21 C -0.129 4.129 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.025 0.975 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.051 8.409 -1.179 10.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.106 0.894 4 C -0.085 4.085 5 N -0.256 5.256 6 C -0.040 4.040 7 C 0.027 3.973 8 C -0.554 4.554 9 H 0.065 0.935 10 C -0.170 4.170 11 N -0.527 5.527 12 Si 0.777 3.223 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.201 1.201 16 C -0.234 4.234 17 C -0.230 4.230 18 C -0.082 4.082 19 C -0.127 4.127 20 H 0.072 0.928 21 C -0.187 4.187 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.872 8.676 -1.038 10.528 hybrid contribution -0.111 -1.902 -0.214 1.917 sum -5.983 6.774 -1.252 9.124 Atomic orbital electron populations 1.21666 0.93284 1.01439 1.02671 1.22298 0.96347 0.98914 0.93000 0.89366 1.23096 0.88962 0.97674 0.98719 1.63584 1.26229 1.27332 1.08410 1.21703 0.97407 0.89436 0.95420 1.19037 0.89058 0.90391 0.98836 1.20860 1.04059 0.92901 1.37629 0.93452 1.25578 0.94692 1.02240 0.94494 1.69893 1.16658 1.36079 1.30100 0.85737 0.77587 0.80851 0.78157 1.19959 1.20683 1.20149 1.23294 1.04935 1.03391 0.91782 1.22785 1.00338 1.03421 0.96462 1.23027 0.95763 1.01730 0.87726 1.22411 0.96350 0.97780 0.96200 0.92835 1.21650 1.02202 0.98801 0.96028 0.91443 0.91125 0.93921 0.95647 0.90455 0.91740 0.95054 0.92979 0.93065 0.87865 0.90005 0.91543 0.92071 0.91544 0.92151 0.93297 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.29 71.98 0.67 -2.40 16 2 C -0.09 -2.47 3.08 -9.41 -0.03 -2.50 16 3 H 0.09 2.33 8.05 -2.39 -0.02 2.31 16 4 C 0.04 1.51 6.19 86.77 0.54 2.04 16 5 N -0.53 -22.08 4.56 -885.55 -4.04 -26.12 16 6 C 0.09 4.29 4.42 86.30 0.38 4.67 16 7 C 0.03 1.41 1.86 -52.93 -0.10 1.31 16 8 C -0.52 -28.87 9.01 25.60 0.23 -28.64 16 9 H 0.05 2.67 7.84 -2.91 -0.02 2.64 16 10 C 0.03 1.65 5.15 84.66 0.44 2.09 16 11 N -0.89 -48.50 9.53 21.45 0.20 -48.29 16 12 Si 0.95 43.07 29.55 68.60 2.03 45.10 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 16 C -0.20 -9.33 8.44 30.59 0.26 -9.07 16 17 C -0.19 -8.87 9.94 30.60 0.30 -8.56 16 18 C 0.05 1.83 4.39 86.65 0.38 2.21 16 19 C -0.11 -3.54 3.01 -9.61 -0.03 -3.56 16 20 H 0.05 1.94 8.01 -2.39 -0.02 1.92 16 21 C -0.13 -3.39 9.16 71.98 0.66 -2.73 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.08 8.11 -2.39 -0.02 1.06 16 25 H 0.03 0.94 7.70 -2.39 -0.02 0.93 16 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 3.50 5.29 -2.39 -0.01 3.48 16 28 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 29 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 30 H 0.05 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.10 4.64 4.23 -2.38 -0.01 4.63 16 32 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.06 2.44 5.95 -2.39 -0.01 2.42 16 35 H 0.07 3.26 5.54 -2.39 -0.01 3.25 16 36 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 37 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -56.88 289.28 2.90 -53.98 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 1.01 Total: 20.48 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 3.70 Total: -45.14 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -3.84 Total: -74.41 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -56.88 2.90 -53.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086009936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.940 kcal (2) G-P(sol) polarization free energy of solvation -56.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds