Wall clock time and date at job start Sun Mar 29 2020 21:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21312 * 119.99743 * 2 1 4 4 C 1.46765 * 119.99824 * 179.97438 * 2 1 3 5 5 C 1.39986 * 120.22061 * 0.02562 * 4 2 1 6 6 C 1.37919 * 119.86496 * 179.97438 * 5 4 2 7 7 F 1.35106 * 119.84862 * 180.02562 * 6 5 4 8 8 C 1.38851 * 120.31312 * 0.02562 * 6 5 4 9 9 C 1.38010 * 120.44269 * 359.69517 * 8 6 5 10 10 C 1.38817 * 120.12320 * 0.55999 * 9 8 6 11 11 O 1.35481 * 120.15278 * 179.73905 * 10 9 8 12 12 C 1.34793 * 117.00293 * 354.39828 * 11 10 9 13 13 H 1.07998 * 119.99433 * 5.04952 * 12 11 10 14 14 C 1.38714 * 120.00177 * 185.05158 * 12 11 10 15 15 N 1.31506 * 120.00054 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00143 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47165 * 89.99575 * 16 14 12 18 18 H 1.48496 * 109.47364 * 210.00184 * 16 14 12 19 19 H 1.48498 * 109.46995 * 330.00285 * 16 14 12 20 20 H 1.08998 * 109.47397 * 239.99987 * 1 2 3 21 21 H 1.09008 * 109.47210 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47459 * 120.00115 * 1 2 3 23 23 H 1.08000 * 120.06639 * 359.96264 * 5 4 2 24 24 H 1.07998 * 119.78234 * 179.97438 * 8 6 5 25 25 H 1.07995 * 119.93392 * 180.27537 * 9 8 6 26 26 H 0.96998 * 120.00259 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2408 -1.2710 0.0006 5 6 1.5455 -2.4860 0.0006 6 6 2.2424 -3.6762 0.0006 7 9 1.5710 -4.8486 0.0001 8 6 3.6309 -3.6752 0.0011 9 6 4.3294 -2.4849 -0.0047 10 6 3.6464 -1.2763 0.0006 11 8 4.3314 -0.1075 0.0003 12 6 5.6725 -0.1841 0.1119 13 1 6.1599 -1.1478 0.1142 14 6 6.4265 0.9748 0.2238 15 7 7.7349 0.9000 0.3332 16 14 5.5835 2.6418 0.2191 17 1 5.2402 3.0268 1.6117 18 1 6.4969 3.6568 -0.3643 19 1 4.3430 2.5667 -0.5937 20 1 -0.3634 -0.5138 0.8900 21 1 -0.3634 1.0277 -0.0005 22 1 -0.3634 -0.5138 -0.8899 23 1 0.4655 -2.4914 0.0008 24 1 4.1680 -4.6121 0.0015 25 1 5.4093 -2.4937 -0.0087 26 1 8.2622 1.7104 0.4118 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087555439.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:27 Heat of formation + Delta-G solvation = -85.724238 kcal Electronic energy + Delta-G solvation = -14886.331699 eV Core-core repulsion = 12038.656105 eV Total energy + Delta-G solvation = -2847.675593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.27051 -39.73352 -37.95470 -36.45062 -32.61936 -31.57917 -28.99934 -28.88161 -25.39593 -23.57165 -21.48025 -19.70401 -18.20525 -17.42812 -16.57972 -15.77534 -15.13891 -14.72242 -14.58358 -14.46985 -14.08262 -13.89163 -13.72155 -13.18230 -12.47876 -12.16097 -11.96377 -11.85178 -11.79977 -11.23280 -11.06849 -10.71628 -10.18769 -9.79097 -9.00888 -8.97971 -8.65024 -7.51051 -6.63285 -4.27553 1.19288 1.88037 2.97120 3.21830 3.27866 3.53102 4.19053 4.21725 4.53734 4.57809 4.91095 4.92317 5.22877 5.32194 5.44031 5.64307 5.80240 5.81673 6.09449 6.26296 6.44039 6.48526 6.72334 6.90858 7.31625 7.52348 7.77076 8.24216 8.70177 9.30626 10.40982 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.010318 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.757385 B = 2713.038631 C = 3623.422649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.386 3.614 3 O -0.447 6.447 4 C -0.237 4.237 5 C -0.057 4.057 6 C -0.017 4.017 7 F -0.156 7.156 8 C -0.076 4.076 9 C -0.202 4.202 10 C 0.188 3.812 11 O -0.159 6.159 12 C -0.398 4.398 13 H 0.111 0.889 14 C 0.073 3.927 15 N -0.860 5.860 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.240 1.240 20 H 0.086 0.914 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.133 0.867 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 -4.866 -0.519 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.264 3.736 3 O -0.323 6.323 4 C -0.240 4.240 5 C -0.076 4.076 6 C -0.037 4.037 7 F -0.135 7.135 8 C -0.095 4.095 9 C -0.221 4.221 10 C 0.129 3.871 11 O -0.059 6.059 12 C -0.473 4.473 13 H 0.128 0.872 14 C -0.134 4.134 15 N -0.495 5.495 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.162 1.162 20 H 0.104 0.896 21 H 0.096 0.904 22 H 0.104 0.896 23 H 0.151 0.849 24 H 0.145 0.855 25 H 0.165 0.835 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.961 -3.947 -0.519 10.727 hybrid contribution -0.153 0.139 0.054 0.213 sum -10.114 -3.809 -0.464 10.817 Atomic orbital electron populations 1.22206 0.95037 1.04183 1.03744 1.21978 0.90734 0.87820 0.73034 1.90630 1.71712 1.33736 1.36251 1.19322 0.90884 0.94471 1.19349 1.20876 0.99450 0.89962 0.97361 1.17131 0.90071 0.80833 1.15636 1.91400 1.80598 1.46162 1.95376 1.20996 0.92103 0.98780 0.97621 1.21175 1.01628 0.90767 1.08483 1.19257 0.90213 0.86025 0.91577 1.83720 1.21298 1.26146 1.74724 1.20977 0.77259 0.97250 1.51784 0.87172 1.24539 0.94712 0.99824 0.94289 1.69620 1.04519 1.31126 1.44190 0.86193 0.80614 0.80492 0.80209 1.19656 1.20874 1.16240 0.89585 0.90399 0.89609 0.84878 0.85524 0.83514 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 8.93 36.00 0.32 -2.15 15 2 C 0.39 7.27 7.21 -30.86 -0.22 7.05 15 3 O -0.45 -10.50 15.90 -16.37 -0.26 -10.76 15 4 C -0.24 -4.62 5.88 -104.92 -0.62 -5.23 15 5 C -0.06 -0.93 9.44 -39.04 -0.37 -1.30 15 6 C -0.02 -0.29 7.28 -39.47 -0.29 -0.58 15 7 F -0.16 -2.53 17.26 2.25 0.04 -2.49 15 8 C -0.08 -1.31 10.01 -39.44 -0.39 -1.70 15 9 C -0.20 -4.07 9.15 -39.45 -0.36 -4.43 15 10 C 0.19 4.23 6.67 -38.49 -0.26 3.98 15 11 O -0.16 -4.19 6.66 -20.92 -0.14 -4.33 15 12 C -0.40 -10.89 9.95 30.91 0.31 -10.58 15 13 H 0.11 2.98 5.43 -52.49 -0.29 2.70 15 14 C 0.07 2.02 5.49 -17.52 -0.10 1.93 15 15 N -0.86 -24.02 13.96 55.48 0.77 -23.25 15 16 Si 0.90 22.15 28.62 -169.99 -4.86 17.29 15 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 19 H -0.24 -6.18 7.11 56.52 0.40 -5.78 15 20 H 0.09 0.91 8.09 -51.93 -0.42 0.49 15 21 H 0.08 0.95 8.12 -51.92 -0.42 0.53 15 22 H 0.09 0.90 8.09 -51.93 -0.42 0.48 15 23 H 0.13 1.68 7.05 -52.49 -0.37 1.31 15 24 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 25 H 0.15 3.01 5.63 -52.49 -0.30 2.72 15 26 H 0.28 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 242.51 15.07 3.65 3.65 Total: -1.00 -29.95 242.51 -4.54 -34.49 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -1.77 Total: -1.58 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.98 Total: -13.03 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.77 Total: -23.25 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.40 Total: -15.08 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.95 -4.54 -34.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087555439.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.234 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds