Wall clock time and date at job start Sun Mar 29 2020 21:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.05681 * 2 1 4 4 C 1.53881 * 110.03240 * 238.58430 * 2 1 3 5 5 C 1.54263 * 106.59853 * 240.71196 * 4 2 1 6 6 C 1.54889 * 104.19995 * 336.39179 * 5 4 2 7 7 H 1.09004 * 110.91187 * 279.55515 * 6 5 4 8 8 N 1.46896 * 110.75773 * 156.25473 * 6 5 4 9 9 C 1.46905 * 110.99974 * 91.67578 * 8 6 5 10 10 C 1.52999 * 109.47213 * 174.71883 * 9 8 6 11 11 C 1.50698 * 115.55129 * 65.16770 * 10 9 8 12 12 H 1.08005 * 120.00013 * 265.03110 * 11 10 9 13 13 C 1.37870 * 120.00457 * 85.02803 * 11 10 9 14 14 N 1.31517 * 120.00021 * 353.13239 * 13 11 10 15 15 Si 1.86797 * 120.00214 * 173.13734 * 13 11 10 16 16 H 1.48493 * 109.47362 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47206 * 120.00214 * 15 13 11 18 18 H 1.48501 * 109.46852 * 239.99715 * 15 13 11 19 19 C 1.53000 * 117.49639 * 279.49648 * 10 9 8 20 20 C 1.53003 * 117.49800 * 210.83703 * 10 9 8 21 21 C 1.54266 * 110.03359 * 121.41866 * 2 1 3 22 22 H 1.09011 * 109.47028 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47039 * 299.95531 * 1 2 3 24 24 H 1.08994 * 109.47612 * 59.96444 * 1 2 3 25 25 H 1.08994 * 110.03020 * 359.97438 * 4 2 1 26 26 H 1.09001 * 110.03206 * 121.42821 * 4 2 1 27 27 H 1.09002 * 110.48392 * 95.06845 * 5 4 2 28 28 H 1.08996 * 110.49018 * 217.71235 * 5 4 2 29 29 H 1.00897 * 111.00129 * 327.71588 * 8 6 5 30 30 H 1.09000 * 109.46418 * 294.71671 * 9 8 6 31 31 H 1.08998 * 109.47007 * 54.71288 * 9 8 6 32 32 H 0.96996 * 120.00155 * 185.03937 * 14 13 11 33 33 H 1.08993 * 117.50000 * 359.97438 * 19 10 9 34 34 H 1.09001 * 117.49485 * 145.02247 * 19 10 9 35 35 H 1.08997 * 117.49670 * 214.97999 * 20 10 9 36 36 H 1.08995 * 117.49679 * 359.96974 * 20 10 9 37 37 H 1.09000 * 110.48600 * 261.56832 * 21 2 1 38 38 H 1.08995 * 110.48921 * 24.08143 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0238 0.0000 4 6 2.0571 -0.7536 -1.2338 5 6 2.8875 -1.9406 -0.7036 6 6 3.3137 -1.5008 0.7190 7 1 4.1718 -0.8298 0.6781 8 7 3.6087 -2.6694 1.5588 9 6 5.0324 -3.0242 1.4859 10 6 5.3265 -4.1580 2.4702 11 6 4.6518 -5.4715 2.1692 12 1 3.7126 -5.7171 2.6425 13 6 5.2334 -6.3596 1.2895 14 7 6.3036 -6.0075 0.6110 15 14 4.5013 -8.0629 1.0613 16 1 3.3089 -8.2102 1.9339 17 1 4.1024 -8.2442 -0.3577 18 1 5.5112 -9.0887 1.4264 19 6 5.5201 -3.7840 3.9411 20 6 6.7227 -4.2076 3.0940 21 6 2.0584 -0.7555 1.2368 22 1 -0.3634 -1.0278 -0.0005 23 1 -0.3633 0.5131 0.8904 24 1 -0.3634 0.5143 -0.8896 25 1 1.2229 -1.1196 -1.8322 26 1 2.6866 -0.0953 -1.8325 27 1 2.2772 -2.8425 -0.6572 28 1 3.7637 -2.1037 -1.3310 29 1 3.0270 -3.4536 1.3043 30 1 5.2743 -3.3495 0.4741 31 1 5.6371 -2.1544 1.7422 32 1 6.6699 -6.6038 -0.0607 33 1 5.4384 -2.7303 4.2074 34 1 5.1599 -4.4882 4.6910 35 1 7.1531 -5.1902 3.2869 36 1 7.4318 -3.4328 2.8027 37 1 2.3298 -0.0537 2.0254 38 1 1.3134 -1.4643 1.5980 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128954351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:09 Heat of formation + Delta-G solvation = -1.295725 kcal Electronic energy + Delta-G solvation = -15667.284866 eV Core-core repulsion = 13316.115524 eV Total energy + Delta-G solvation = -2351.169342 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.52009 -36.57609 -33.51485 -31.87707 -29.89528 -28.03563 -25.62163 -24.72767 -23.18820 -20.93459 -20.09063 -19.40262 -18.90341 -16.06205 -15.61966 -14.81557 -14.58943 -14.25689 -13.75101 -13.38032 -13.03444 -12.76742 -12.44571 -12.16912 -11.67839 -11.63351 -11.15333 -10.96978 -10.88425 -10.70405 -10.63146 -10.51518 -10.39578 -10.28708 -10.17059 -10.06648 -9.33271 -8.70373 -8.38998 -8.01070 -7.35479 -5.99803 -4.05511 3.28011 3.37228 3.41391 4.41904 4.69050 4.88493 4.91711 5.24938 5.29074 5.48388 5.52006 5.61615 5.64979 5.75585 5.79942 5.99447 6.03891 6.07656 6.14145 6.24285 6.26708 6.30860 6.52729 6.53847 6.57804 6.61358 6.67133 6.91248 6.92181 7.00806 7.22129 7.57864 7.62157 7.91241 8.11190 8.38496 8.54341 8.98091 9.59923 11.08212 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028584 B = 0.007326 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.318857 B = 3821.066986 C = 4314.231580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.066 0.934 4 C -0.117 4.117 5 C -0.153 4.153 6 C 0.084 3.916 7 H 0.072 0.928 8 N -0.674 5.674 9 C 0.107 3.893 10 C 0.050 3.950 11 C -0.491 4.491 12 H 0.060 0.940 13 C 0.070 3.930 14 N -0.880 5.880 15 Si 0.886 3.114 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.201 4.201 20 C -0.163 4.163 21 C -0.106 4.106 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.347 0.653 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.258 0.742 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 9.599 -2.345 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.193 4.193 6 C -0.027 4.027 7 H 0.090 0.910 8 N -0.304 5.304 9 C -0.022 4.022 10 C 0.049 3.951 11 C -0.529 4.529 12 H 0.078 0.922 13 C -0.133 4.133 14 N -0.518 5.518 15 Si 0.714 3.286 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.238 4.238 20 C -0.201 4.201 21 C -0.145 4.145 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.953 9.855 -1.848 12.202 hybrid contribution -0.147 -1.367 -1.199 1.824 sum -7.100 8.489 -3.047 11.479 Atomic orbital electron populations 1.21868 0.95408 1.01690 1.00979 1.21743 0.95350 0.99133 0.95567 0.91597 1.22144 0.99152 0.97145 0.97052 1.23082 0.99549 0.97991 0.98633 1.22538 0.96733 0.93839 0.89621 0.90956 1.60438 1.07091 1.08037 1.54828 1.21441 0.86516 0.95299 0.98929 1.18760 0.94607 0.93738 0.88003 1.20511 1.06648 0.99358 1.26400 0.92172 1.25000 0.94511 0.97921 0.95877 1.70005 1.21933 1.36675 1.23143 0.86639 0.79218 0.85020 0.77758 1.19670 1.21207 1.21036 1.22867 1.05326 0.98454 0.97144 1.22529 0.91701 1.00001 1.05910 1.22399 0.97501 0.98486 0.96089 0.92599 0.92956 0.93248 0.92207 0.92428 0.91470 0.92046 0.83305 0.94716 0.94671 0.93218 0.91707 0.90954 0.90393 0.92244 0.92048 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.84 37.15 0.33 -1.16 16 2 C -0.10 -1.18 3.50 -89.50 -0.31 -1.49 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -1.46 6.46 -25.61 -0.17 -1.63 16 5 C -0.15 -2.34 6.41 -25.07 -0.16 -2.50 16 6 C 0.08 1.37 3.23 -65.72 -0.21 1.16 16 7 H 0.07 1.21 7.74 -51.93 -0.40 0.80 16 8 N -0.67 -13.35 6.36 -104.62 -0.66 -14.02 16 9 C 0.11 2.42 5.46 -3.82 -0.02 2.40 16 10 C 0.05 1.23 1.56 -155.66 -0.24 0.99 16 11 C -0.49 -13.24 8.32 -34.44 -0.29 -13.53 16 12 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 13 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 14 N -0.88 -24.89 12.94 55.43 0.72 -24.17 16 15 Si 0.89 21.04 29.55 -169.99 -5.02 16.02 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.20 -4.58 9.96 -26.69 -0.27 -4.84 16 20 C -0.16 -3.95 9.45 -26.69 -0.25 -4.21 16 21 C -0.11 -1.49 6.05 -25.07 -0.15 -1.65 16 22 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.35 7.23 7.78 -39.29 -0.31 6.93 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.76 7.90 -51.93 -0.41 0.35 16 32 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -27.26 305.34 -9.15 -36.41 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.95 Total: 5.82 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -1.84 Total: -24.66 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.05 Total: -38.19 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.26 -9.15 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128954351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.116 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds