Wall clock time and date at job start Sun Mar 29 2020 21:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.05681 * 2 1 4 4 C 1.53881 * 110.03240 * 238.58430 * 2 1 3 5 5 C 1.54263 * 106.59853 * 240.71196 * 4 2 1 6 6 C 1.54889 * 104.19995 * 336.39179 * 5 4 2 7 7 H 1.09004 * 110.91187 * 279.55515 * 6 5 4 8 8 N 1.46896 * 110.75773 * 156.25473 * 6 5 4 9 9 C 1.46905 * 110.99974 * 91.67578 * 8 6 5 10 10 C 1.52999 * 109.47213 * 174.71883 * 9 8 6 11 11 C 1.50698 * 115.55129 * 65.16770 * 10 9 8 12 12 H 1.08005 * 120.00013 * 265.03110 * 11 10 9 13 13 C 1.37870 * 120.00457 * 85.02803 * 11 10 9 14 14 N 1.31517 * 120.00021 * 353.13239 * 13 11 10 15 15 Si 1.86797 * 120.00214 * 173.13734 * 13 11 10 16 16 H 1.48493 * 109.47362 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47206 * 120.00214 * 15 13 11 18 18 H 1.48501 * 109.46852 * 239.99715 * 15 13 11 19 19 C 1.53000 * 117.49639 * 279.49648 * 10 9 8 20 20 C 1.53003 * 117.49800 * 210.83703 * 10 9 8 21 21 C 1.54266 * 110.03359 * 121.41866 * 2 1 3 22 22 H 1.09011 * 109.47028 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47039 * 299.95531 * 1 2 3 24 24 H 1.08994 * 109.47612 * 59.96444 * 1 2 3 25 25 H 1.08994 * 110.03020 * 359.97438 * 4 2 1 26 26 H 1.09001 * 110.03206 * 121.42821 * 4 2 1 27 27 H 1.09002 * 110.48392 * 95.06845 * 5 4 2 28 28 H 1.08996 * 110.49018 * 217.71235 * 5 4 2 29 29 H 1.00897 * 111.00129 * 327.71588 * 8 6 5 30 30 H 1.09000 * 109.46418 * 294.71671 * 9 8 6 31 31 H 1.08998 * 109.47007 * 54.71288 * 9 8 6 32 32 H 0.96996 * 120.00155 * 185.03937 * 14 13 11 33 33 H 1.08993 * 117.50000 * 359.97438 * 19 10 9 34 34 H 1.09001 * 117.49485 * 145.02247 * 19 10 9 35 35 H 1.08997 * 117.49670 * 214.97999 * 20 10 9 36 36 H 1.08995 * 117.49679 * 359.96974 * 20 10 9 37 37 H 1.09000 * 110.48600 * 261.56832 * 21 2 1 38 38 H 1.08995 * 110.48921 * 24.08143 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0238 0.0000 4 6 2.0571 -0.7536 -1.2338 5 6 2.8875 -1.9406 -0.7036 6 6 3.3137 -1.5008 0.7190 7 1 4.1718 -0.8298 0.6781 8 7 3.6087 -2.6694 1.5588 9 6 5.0324 -3.0242 1.4859 10 6 5.3265 -4.1580 2.4702 11 6 4.6518 -5.4715 2.1692 12 1 3.7126 -5.7171 2.6425 13 6 5.2334 -6.3596 1.2895 14 7 6.3036 -6.0075 0.6110 15 14 4.5013 -8.0629 1.0613 16 1 3.3089 -8.2102 1.9339 17 1 4.1024 -8.2442 -0.3577 18 1 5.5112 -9.0887 1.4264 19 6 5.5201 -3.7840 3.9411 20 6 6.7227 -4.2076 3.0940 21 6 2.0584 -0.7555 1.2368 22 1 -0.3634 -1.0278 -0.0005 23 1 -0.3633 0.5131 0.8904 24 1 -0.3634 0.5143 -0.8896 25 1 1.2229 -1.1196 -1.8322 26 1 2.6866 -0.0953 -1.8325 27 1 2.2772 -2.8425 -0.6572 28 1 3.7637 -2.1037 -1.3310 29 1 3.0270 -3.4536 1.3043 30 1 5.2743 -3.3495 0.4741 31 1 5.6371 -2.1544 1.7422 32 1 6.6699 -6.6038 -0.0607 33 1 5.4384 -2.7303 4.2074 34 1 5.1599 -4.4882 4.6910 35 1 7.1531 -5.1902 3.2869 36 1 7.4318 -3.4328 2.8027 37 1 2.3298 -0.0537 2.0254 38 1 1.3134 -1.4643 1.5980 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128954351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:08 Heat of formation + Delta-G solvation = -15.735128 kcal Electronic energy + Delta-G solvation = -15667.911005 eV Core-core repulsion = 13316.115524 eV Total energy + Delta-G solvation = -2351.795481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78244 -38.36136 -34.97065 -33.95139 -31.05146 -29.29235 -27.59771 -26.13149 -24.59642 -22.83441 -21.50654 -20.80265 -20.37734 -17.95158 -16.91636 -16.61521 -16.17650 -15.76625 -15.54695 -14.63138 -14.42740 -14.11031 -13.74228 -13.51440 -13.27287 -13.02055 -12.95090 -12.88368 -12.61223 -12.26589 -12.07007 -11.98531 -11.74642 -11.55264 -11.43208 -11.26629 -11.14342 -10.71162 -10.39561 -9.92133 -8.99142 -8.08429 -6.19392 1.38381 1.42558 1.52710 2.42681 3.19482 3.28938 3.67737 3.82090 3.82900 4.10481 4.32609 4.42036 4.50347 4.53441 4.65936 4.71786 4.74445 4.75773 4.83177 4.96524 5.02169 5.03579 5.06330 5.07977 5.18240 5.21234 5.28462 5.36617 5.37859 5.45283 5.63227 5.67186 5.70472 5.81076 6.43990 6.51237 6.70394 6.90302 7.48581 8.99250 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028584 B = 0.007326 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.318857 B = 3821.066986 C = 4314.231580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.152 4.152 6 C 0.078 3.922 7 H 0.070 0.930 8 N -0.673 5.673 9 C 0.123 3.877 10 C 0.024 3.976 11 C -0.501 4.501 12 H 0.052 0.948 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.946 3.054 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.284 1.284 19 C -0.178 4.178 20 C -0.169 4.169 21 C -0.100 4.100 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.339 0.661 30 H 0.002 0.998 31 H 0.042 0.958 32 H 0.258 0.742 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 10.651 -2.359 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.191 4.191 6 C -0.033 4.033 7 H 0.088 0.912 8 N -0.302 5.302 9 C -0.006 4.006 10 C 0.024 3.976 11 C -0.539 4.539 12 H 0.070 0.930 13 C -0.175 4.175 14 N -0.547 5.547 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.211 1.211 19 C -0.215 4.215 20 C -0.207 4.207 21 C -0.138 4.138 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.158 0.842 30 H 0.021 0.979 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.292 10.922 -1.855 13.838 hybrid contribution 0.278 -1.672 -1.173 2.061 sum -8.014 9.250 -3.028 12.608 Atomic orbital electron populations 1.21845 0.94054 1.01657 1.02151 1.21724 0.96442 0.99265 0.93779 0.90222 1.22127 0.99166 0.96015 0.97573 1.23011 0.99299 0.98940 0.97896 1.22679 0.97904 0.92623 0.90084 0.91197 1.60459 1.05210 1.08529 1.56005 1.21149 0.88360 0.94653 0.96451 1.18935 0.94927 0.93940 0.89819 1.20713 1.06450 1.00532 1.26211 0.92965 1.25650 0.94968 1.01105 0.95735 1.70108 1.23113 1.37776 1.23727 0.85691 0.78514 0.80815 0.77744 1.19119 1.20800 1.21050 1.22842 1.03318 0.99543 0.95834 1.22453 0.92024 0.99317 1.06914 1.22349 0.95937 0.98281 0.97265 0.93252 0.92164 0.91763 0.91143 0.91369 0.92592 0.93560 0.84218 0.97943 0.93932 0.93295 0.89664 0.90953 0.92570 0.91184 0.91564 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.84 71.98 0.64 -1.88 16 2 C -0.09 -1.97 3.50 -10.07 -0.04 -2.01 16 3 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.11 -2.54 6.46 31.32 0.20 -2.34 16 5 C -0.15 -4.59 6.41 31.67 0.20 -4.39 16 6 C 0.08 2.49 3.23 46.21 0.15 2.64 16 7 H 0.07 2.28 7.74 -2.38 -0.02 2.26 16 8 N -0.67 -26.59 6.36 -484.91 -3.08 -29.67 16 9 C 0.12 5.62 5.46 86.30 0.47 6.09 16 10 C 0.02 1.22 1.56 -52.93 -0.08 1.13 16 11 C -0.50 -27.23 8.32 25.60 0.21 -27.02 16 12 H 0.05 2.86 7.82 -2.91 -0.02 2.83 16 13 C 0.03 1.39 5.39 84.65 0.46 1.84 16 14 N -0.91 -52.18 12.94 21.45 0.28 -51.90 16 15 Si 0.95 43.48 29.55 68.60 2.03 45.51 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 C -0.18 -7.94 9.96 30.62 0.30 -7.64 16 20 C -0.17 -8.19 9.45 30.62 0.29 -7.90 16 21 C -0.10 -2.63 6.05 31.67 0.19 -2.44 16 22 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.48 7.67 -2.39 -0.02 1.47 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.79 7.77 -2.39 -0.02 1.78 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.34 14.29 7.78 -89.70 -0.70 13.59 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.04 1.84 7.90 -2.39 -0.02 1.82 16 32 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 33 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.75 7.85 -2.39 -0.02 1.73 16 Total: -1.00 -57.43 305.34 2.52 -54.90 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.30 Total: 25.07 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 3.00 Total: -43.91 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.80 Total: -81.57 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -57.43 2.52 -54.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128954351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.168 kcal (2) G-P(sol) polarization free energy of solvation -57.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds