Wall clock time and date at job start Sun Mar 29 2020 21:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 110.05095 * 2 1 4 4 C 1.54268 * 110.02956 * 121.41721 * 2 1 3 5 5 C 1.54888 * 104.30984 * 142.96163 * 4 2 1 6 6 C 1.54890 * 102.75075 * 321.98862 * 5 4 2 7 7 H 1.08997 * 110.48535 * 279.26772 * 6 5 4 8 8 N 1.46897 * 110.48612 * 156.62242 * 6 5 4 9 9 C 1.46894 * 111.00073 * 86.45204 * 8 6 5 10 10 C 1.53004 * 109.47265 * 185.43200 * 9 8 6 11 11 C 1.50700 * 115.55011 * 39.53513 * 10 9 8 12 12 H 1.08007 * 119.99977 * 264.91873 * 11 10 9 13 13 C 1.37882 * 120.00196 * 84.91067 * 11 10 9 14 14 N 1.31511 * 119.99716 * 353.39826 * 13 11 10 15 15 Si 1.86795 * 119.99963 * 173.39616 * 13 11 10 16 16 H 1.48501 * 109.47442 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47219 * 120.00244 * 15 13 11 18 18 H 1.48500 * 109.46922 * 240.00462 * 15 13 11 19 19 C 1.53002 * 117.50121 * 253.82797 * 10 9 8 20 20 C 1.52997 * 59.99991 * 252.51132 * 19 10 9 21 21 C 1.54215 * 110.14340 * 238.44143 * 2 1 3 22 22 H 1.08999 * 109.47216 * 300.03546 * 1 2 3 23 23 H 1.09004 * 109.46967 * 60.03853 * 1 2 3 24 24 H 1.09002 * 109.46647 * 180.02562 * 1 2 3 25 25 H 1.09002 * 110.48956 * 24.21412 * 4 2 1 26 26 H 1.09003 * 110.48350 * 261.70393 * 4 2 1 27 27 H 1.09001 * 110.75409 * 80.30860 * 5 4 2 28 28 H 1.09000 * 110.75455 * 203.48977 * 5 4 2 29 29 H 1.00899 * 110.99941 * 210.41320 * 8 6 5 30 30 H 1.08997 * 109.47594 * 305.43332 * 9 8 6 31 31 H 1.09004 * 109.46961 * 65.43670 * 9 8 6 32 32 H 0.97001 * 119.99848 * 179.97438 * 14 13 11 33 33 H 1.09002 * 117.49398 * 359.97438 * 19 10 9 34 34 H 1.08997 * 117.49984 * 145.02220 * 19 10 9 35 35 H 1.08999 * 117.49846 * 252.51668 * 20 19 10 36 36 H 1.09000 * 117.50406 * 107.48759 * 20 19 10 37 37 H 1.09000 * 110.00159 * 121.44408 * 21 2 1 38 38 H 1.09001 * 110.06992 * 0.05777 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 1.2369 5 6 3.3151 -1.5006 0.7224 6 6 2.8916 -1.9433 -0.7001 7 1 2.2820 -2.8456 -0.6532 8 7 4.0741 -2.1635 -1.5434 9 6 4.5867 -3.5309 -1.3845 10 6 5.8911 -3.6811 -2.1701 11 6 6.8216 -2.4969 -2.1173 12 1 6.7958 -1.7545 -2.9014 13 6 7.7058 -2.3610 -1.0681 14 7 7.6498 -3.1908 -0.0494 15 14 8.9833 -0.9984 -1.0938 16 1 8.8383 -0.2073 -2.3421 17 1 8.7847 -0.1116 0.0807 18 1 10.3428 -1.5934 -1.0406 19 6 5.8440 -4.4857 -3.4706 20 6 6.5224 -5.0734 -2.2316 21 6 2.0612 -0.7577 -1.2337 22 1 -0.3633 0.5144 0.8897 23 1 -0.3633 0.5133 -0.8904 24 1 -0.3633 -1.0277 0.0005 25 1 1.3143 -1.4660 1.5967 26 1 2.3276 -0.0537 2.0264 27 1 4.1720 -0.8283 0.6788 28 1 3.5356 -2.3646 1.3493 29 1 3.8703 -1.9638 -2.5112 30 1 4.7735 -3.7287 -0.3290 31 1 3.8511 -4.2409 -1.7627 32 1 8.2721 -3.0955 0.6886 33 1 4.8838 -4.9084 -3.7663 34 1 6.4860 -4.1585 -4.2884 35 1 7.6108 -5.1328 -2.2342 36 1 6.0086 -5.8824 -1.7123 37 1 2.6912 -0.1000 -1.8325 38 1 1.2288 -1.1252 -1.8339 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128954544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:10 Heat of formation + Delta-G solvation = -9.960083 kcal Electronic energy + Delta-G solvation = -15782.419524 eV Core-core repulsion = 13430.874468 eV Total energy + Delta-G solvation = -2351.545057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72735 -38.36403 -34.97106 -33.83043 -31.13986 -29.32077 -27.45946 -25.92158 -24.84350 -22.87981 -21.12796 -21.00095 -20.33533 -17.92913 -16.80357 -16.62633 -16.17214 -15.84133 -15.22866 -14.83983 -14.50658 -14.23427 -13.91923 -13.63343 -13.31418 -12.93999 -12.87239 -12.67183 -12.41320 -12.17974 -11.98171 -11.84309 -11.67511 -11.52179 -11.49846 -11.32111 -11.15885 -10.70098 -10.30836 -9.85567 -8.91656 -7.97184 -6.00970 1.42163 1.45164 1.54693 2.51520 3.33230 3.39612 3.59968 3.70790 3.82432 4.08090 4.37871 4.44806 4.53369 4.55559 4.63318 4.66677 4.75763 4.77068 4.79375 4.85305 4.99275 5.00761 5.05213 5.14582 5.18449 5.22384 5.30222 5.36083 5.41130 5.45228 5.62051 5.65530 5.72824 5.91564 6.44759 6.65123 6.86626 7.00998 7.62927 9.12852 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.008182 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.815946 B = 3421.219629 C = 3999.900752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.111 4.111 6 C 0.081 3.919 7 H 0.035 0.965 8 N -0.666 5.666 9 C 0.126 3.874 10 C 0.019 3.981 11 C -0.464 4.464 12 H 0.047 0.953 13 C 0.026 3.974 14 N -0.912 5.912 15 Si 0.940 3.060 16 H -0.269 1.269 17 H -0.289 1.289 18 H -0.286 1.286 19 C -0.191 4.191 20 C -0.167 4.167 21 C -0.113 4.113 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.335 0.665 30 H 0.036 0.964 31 H 0.006 0.994 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.986 4.049 -0.390 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.029 4.029 7 H 0.053 0.947 8 N -0.296 5.296 9 C -0.004 4.004 10 C 0.019 3.981 11 C -0.502 4.502 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.551 5.551 15 Si 0.767 3.233 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.212 1.212 19 C -0.228 4.228 20 C -0.205 4.205 21 C -0.151 4.151 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.154 0.846 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.467 4.286 0.222 13.185 hybrid contribution 0.631 -0.168 -0.151 0.670 sum -11.835 4.118 0.071 12.532 Atomic orbital electron populations 1.21839 0.93444 1.01964 1.02228 1.21725 0.96611 0.98970 0.93740 0.91088 1.22401 0.96155 0.98879 0.97538 1.22410 0.97905 0.98994 0.95656 1.22392 0.89765 0.96814 0.93918 0.94676 1.60237 1.31332 1.26383 1.11697 1.21165 0.93432 0.87464 0.98331 1.19074 0.94174 0.90909 0.93969 1.20387 1.16771 1.06492 1.06570 0.93475 1.25470 0.99039 0.97584 0.95164 1.70128 1.37555 1.39102 1.08319 0.85791 0.79557 0.80195 0.77715 1.19362 1.21528 1.21235 1.23070 1.01030 1.06533 0.92134 1.22394 0.97845 0.98470 1.01832 1.22382 0.98600 0.96137 0.97997 0.91870 0.92009 0.92620 0.90840 0.91343 0.93395 0.94126 0.84648 0.94561 0.97562 0.93921 0.89348 0.90459 0.92472 0.91254 0.91757 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.86 71.99 0.64 -1.80 16 2 C -0.09 -2.12 3.52 -9.95 -0.03 -2.16 16 3 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.11 -2.88 6.35 31.67 0.20 -2.68 16 5 C -0.11 -3.90 6.44 31.89 0.21 -3.69 16 6 C 0.08 2.73 3.16 45.99 0.15 2.88 16 7 H 0.04 1.17 7.92 -2.39 -0.02 1.15 16 8 N -0.67 -27.19 5.59 -486.04 -2.72 -29.91 16 9 C 0.13 5.69 5.59 86.31 0.48 6.17 16 10 C 0.02 0.96 1.74 -52.93 -0.09 0.86 16 11 C -0.46 -25.49 8.15 25.60 0.21 -25.28 16 12 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 13 C 0.03 1.46 5.39 84.66 0.46 1.92 16 14 N -0.91 -53.62 12.95 21.45 0.28 -53.34 16 15 Si 0.94 45.22 29.54 68.60 2.03 47.25 16 16 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 C -0.19 -8.11 9.88 30.59 0.30 -7.81 16 20 C -0.17 -7.99 9.48 30.59 0.29 -7.70 16 21 C -0.11 -3.02 5.95 31.44 0.19 -2.84 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.70 7.85 -2.39 -0.02 1.68 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.34 12.77 8.48 -89.70 -0.76 12.01 16 30 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 31 H 0.01 0.27 7.94 -2.38 -0.02 0.25 16 32 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 33 H 0.09 3.26 8.08 -2.39 -0.02 3.24 16 34 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.06 1.84 7.99 -2.39 -0.02 1.82 16 38 H 0.07 1.73 7.69 -2.39 -0.02 1.71 16 Total: -1.00 -60.17 305.43 2.82 -57.35 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.24 Total: 20.78 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 2.99 Total: -42.12 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.44 Total: -83.25 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -60.17 2.82 -57.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128954544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.390 kcal (2) G-P(sol) polarization free energy of solvation -60.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds