Wall clock time and date at job start Sun Mar 29 2020 21:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99585 * 2 1 4 4 H 1.48501 * 109.46679 * 239.99655 * 3 2 1 5 5 H 1.48493 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47004 * 119.99708 * 3 2 1 7 7 C 1.37874 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00097 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99886 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46871 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21528 * 119.99761 * 0.02562 * 11 10 9 13 13 C 1.48043 * 120.00259 * 179.97438 * 11 10 9 14 14 C 1.39385 * 119.69490 * 180.02562 * 13 11 10 15 15 C 1.38465 * 119.09496 * 180.02562 * 14 13 11 16 16 C 1.38895 * 118.47008 * 359.97438 * 15 14 13 17 17 F 1.35098 * 120.35213 * 179.97438 * 16 15 14 18 18 C 1.38881 * 119.30039 * 0.02562 * 16 15 14 19 19 N 1.31465 * 120.85378 * 0.02562 * 18 16 15 20 20 H 0.97000 * 120.00076 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47177 * 59.99623 * 9 7 2 22 22 H 1.08999 * 109.46938 * 299.99601 * 9 7 2 23 23 H 0.96997 * 120.00023 * 0.02562 * 10 9 7 24 24 H 1.07998 * 120.44821 * 0.27236 * 14 13 11 25 25 H 1.08000 * 120.76351 * 180.02562 * 15 14 13 26 26 H 1.07994 * 119.57634 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5593 -5.1054 0.0011 13 6 2.7162 -6.0085 0.0005 14 6 2.2446 -7.3202 0.0005 15 6 3.1554 -8.3631 0.0005 16 6 4.5106 -8.0587 -0.0001 17 9 5.4322 -9.0465 0.0004 18 6 4.9083 -6.7280 0.0000 19 7 4.0200 -5.7589 0.0010 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 3.1569 -3.4353 0.0009 24 1 1.1833 -7.5202 -0.0035 25 1 2.8198 -9.3896 0.0001 26 1 5.9608 -6.4862 -0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129967513.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:40 Heat of formation + Delta-G solvation = -51.829841 kcal Electronic energy + Delta-G solvation = -14164.709648 eV Core-core repulsion = 11350.796577 eV Total energy + Delta-G solvation = -2813.913071 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.23477 -40.40762 -38.27311 -34.33972 -32.83923 -32.20991 -31.09960 -27.37767 -24.57630 -23.95717 -22.40466 -20.18247 -18.27960 -17.69010 -17.35854 -16.07016 -16.05595 -15.11827 -14.94745 -14.68121 -14.33766 -13.92342 -13.78353 -13.23445 -13.00320 -12.51695 -11.95557 -11.81963 -11.00873 -10.87147 -10.35017 -10.17654 -10.02116 -9.44138 -9.29532 -9.12809 -8.74094 -7.93180 -6.16691 -4.23520 0.44874 0.90891 2.94050 3.27113 3.31441 3.33225 3.67659 3.82458 3.94374 4.20312 4.35813 4.49143 4.62139 4.96924 5.19619 5.33440 5.50387 5.66891 5.80917 6.36529 7.23643 7.31219 7.47095 7.51798 7.69233 7.94969 8.56482 8.72267 8.98930 9.42589 10.93512 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.053853 B = 0.005413 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.813883 B = 5171.301596 C = 5675.971687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.246 3.754 10 N -0.684 5.684 11 C 0.549 3.451 12 O -0.547 6.547 13 C 0.084 3.916 14 C -0.088 4.088 15 C -0.116 4.116 16 C 0.056 3.944 17 F -0.130 7.130 18 C 0.075 3.925 19 N -0.430 5.430 20 H 0.267 0.733 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.402 0.598 24 H 0.159 0.841 25 H 0.152 0.848 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.901 -14.488 -0.004 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.126 3.874 10 N -0.331 5.331 11 C 0.332 3.668 12 O -0.426 6.426 13 C -0.055 4.055 14 C -0.109 4.109 15 C -0.143 4.143 16 C 0.034 3.966 17 F -0.108 7.108 18 C -0.086 4.086 19 N -0.141 5.141 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.237 0.763 24 H 0.177 0.823 25 H 0.170 0.830 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.139 -13.590 -0.003 15.841 hybrid contribution 0.844 -0.141 0.000 0.856 sum 8.983 -13.731 -0.003 16.408 Atomic orbital electron populations 1.69962 1.06105 1.27473 1.48835 1.24942 0.94927 0.99454 0.94618 0.86448 0.79396 0.82157 0.78771 1.20015 1.21084 1.20010 1.21190 0.93405 0.90286 1.53367 0.91723 1.19239 0.88284 0.81803 0.98074 1.46415 1.12242 1.05411 1.68997 1.17761 0.86932 0.83012 0.79133 1.90761 1.15194 1.84569 1.52087 1.21756 0.90553 0.94387 0.98799 1.22103 1.02260 0.91122 0.95437 1.21656 0.91018 1.01521 1.00059 1.19054 0.87137 0.86730 1.03656 1.91525 1.65141 1.60461 1.93686 1.22965 1.00743 0.86411 0.98488 1.67701 1.01836 1.35581 1.08955 0.92361 0.95073 0.95068 0.76298 0.82321 0.83005 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.28 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 15 8 H 0.06 1.67 7.60 -52.49 -0.40 1.27 15 9 C 0.25 6.56 5.43 -5.19 -0.03 6.53 15 10 N -0.68 -15.09 5.54 -62.37 -0.35 -15.44 15 11 C 0.55 11.38 7.81 -12.24 -0.10 11.28 15 12 O -0.55 -12.88 16.32 5.34 0.09 -12.79 15 13 C 0.08 1.36 6.75 -83.02 -0.56 0.80 15 14 C -0.09 -1.15 9.63 -39.07 -0.38 -1.53 15 15 C -0.12 -1.20 10.15 -39.25 -0.40 -1.60 15 16 C 0.06 0.60 7.36 -39.10 -0.29 0.32 15 17 F -0.13 -1.33 17.28 2.25 0.04 -1.29 15 18 C 0.08 0.87 11.17 -17.47 -0.20 0.67 15 19 N -0.43 -6.39 9.53 -9.74 -0.09 -6.49 15 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.40 8.11 7.65 -40.82 -0.31 7.80 15 24 H 0.16 1.95 7.64 -52.49 -0.40 1.55 15 25 H 0.15 1.10 8.06 -52.49 -0.42 0.67 15 26 H 0.17 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 249.43 15.07 3.76 3.76 Total: -1.00 -31.01 249.43 -5.13 -36.15 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -1.94 Total: 2.52 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.36 Total: 2.95 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.30 Total: -47.20 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.01 -5.13 -36.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129967513.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.683 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds