Wall clock time and date at job start Sun Mar 29 2020 21:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99585 * 2 1 4 4 H 1.48501 * 109.46679 * 239.99655 * 3 2 1 5 5 H 1.48493 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47004 * 119.99708 * 3 2 1 7 7 C 1.37874 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00097 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99886 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46871 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21528 * 119.99761 * 0.02562 * 11 10 9 13 13 C 1.48043 * 120.00259 * 179.97438 * 11 10 9 14 14 C 1.39385 * 119.69490 * 180.02562 * 13 11 10 15 15 C 1.38465 * 119.09496 * 180.02562 * 14 13 11 16 16 C 1.38895 * 118.47008 * 359.97438 * 15 14 13 17 17 F 1.35098 * 120.35213 * 179.97438 * 16 15 14 18 18 C 1.38881 * 119.30039 * 0.02562 * 16 15 14 19 19 N 1.31465 * 120.85378 * 0.02562 * 18 16 15 20 20 H 0.97000 * 120.00076 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47177 * 59.99623 * 9 7 2 22 22 H 1.08999 * 109.46938 * 299.99601 * 9 7 2 23 23 H 0.96997 * 120.00023 * 0.02562 * 10 9 7 24 24 H 1.07998 * 120.44821 * 0.27236 * 14 13 11 25 25 H 1.08000 * 120.76351 * 180.02562 * 15 14 13 26 26 H 1.07994 * 119.57634 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5593 -5.1054 0.0011 13 6 2.7162 -6.0085 0.0005 14 6 2.2446 -7.3202 0.0005 15 6 3.1554 -8.3631 0.0005 16 6 4.5106 -8.0587 -0.0001 17 9 5.4322 -9.0465 0.0004 18 6 4.9083 -6.7280 0.0000 19 7 4.0200 -5.7589 0.0010 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 3.1569 -3.4353 0.0009 24 1 1.1833 -7.5202 -0.0035 25 1 2.8198 -9.3896 0.0001 26 1 5.9608 -6.4862 -0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129967513.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:40 Heat of formation + Delta-G solvation = -74.440330 kcal Electronic energy + Delta-G solvation = -14165.690112 eV Core-core repulsion = 11350.796577 eV Total energy + Delta-G solvation = -2814.893535 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.10271 -41.60702 -39.83522 -36.26627 -34.49200 -33.58927 -32.26049 -29.35532 -25.98798 -25.02853 -24.12701 -21.79736 -19.80250 -18.70820 -18.41120 -17.96900 -16.97132 -16.90757 -16.40490 -16.28465 -15.77757 -15.03521 -14.91208 -14.58425 -14.33615 -13.99436 -13.78595 -13.61307 -12.96535 -12.68785 -12.25458 -11.53638 -11.36768 -11.12058 -10.80687 -10.72290 -10.21235 -9.84259 -8.29716 -6.46360 -0.63347 -0.00585 1.43505 1.47731 1.55936 1.60839 2.20249 2.43233 2.65087 2.82897 3.05064 3.10167 3.62823 3.70058 3.81565 4.14642 4.62263 4.71185 4.80047 5.06904 5.20493 5.41613 5.43010 5.61885 5.81594 6.44057 6.62069 6.82835 7.17899 7.32559 8.82189 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.053853 B = 0.005413 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.813883 B = 5171.301596 C = 5675.971687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.264 3.736 10 N -0.686 5.686 11 C 0.549 3.451 12 O -0.584 6.584 13 C 0.054 3.946 14 C -0.084 4.084 15 C -0.100 4.100 16 C 0.074 3.926 17 F -0.119 7.119 18 C 0.078 3.922 19 N -0.450 5.450 20 H 0.270 0.730 21 H -0.004 1.004 22 H -0.004 1.004 23 H 0.412 0.588 24 H 0.161 0.839 25 H 0.191 0.809 26 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.424 -15.583 -0.004 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.334 5.334 11 C 0.334 3.666 12 O -0.466 6.466 13 C -0.083 4.083 14 C -0.105 4.105 15 C -0.126 4.126 16 C 0.052 3.948 17 F -0.098 7.098 18 C -0.085 4.085 19 N -0.161 5.161 20 H 0.079 0.921 21 H 0.014 0.986 22 H 0.014 0.986 23 H 0.249 0.751 24 H 0.179 0.821 25 H 0.208 0.792 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.689 -14.718 -0.004 18.190 hybrid contribution 0.125 0.011 0.000 0.126 sum 10.814 -14.707 -0.004 18.255 Atomic orbital electron populations 1.70116 1.08140 1.28737 1.49677 1.26032 0.95814 1.03758 0.93683 0.85207 0.77954 0.76581 0.79489 1.18732 1.20813 1.18723 1.21560 0.94249 0.90617 1.53400 0.90158 1.18695 0.88553 0.83848 0.94780 1.46155 1.11894 1.05216 1.70170 1.18438 0.87446 0.83535 0.77162 1.90720 1.17245 1.85260 1.53348 1.21035 0.90525 0.93470 1.03228 1.22139 1.03038 0.90380 0.94959 1.21964 0.90249 1.02455 0.97896 1.19061 0.87414 0.86591 1.01706 1.91566 1.64869 1.60018 1.93332 1.23445 1.01470 0.86304 0.97237 1.67575 1.01486 1.37216 1.09794 0.92106 0.98602 0.98598 0.75134 0.82110 0.79169 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.29 21.45 0.28 -55.80 15 2 C 0.01 0.40 5.46 84.65 0.46 0.86 15 3 Si 0.98 42.80 29.54 68.60 2.03 44.83 15 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 7 C -0.56 -31.32 9.28 25.60 0.24 -31.08 15 8 H 0.08 4.13 7.60 -2.91 -0.02 4.10 15 9 C 0.26 14.83 5.43 85.63 0.46 15.29 15 10 N -0.69 -31.57 5.54 -469.52 -2.60 -34.17 15 11 C 0.55 23.65 7.81 86.85 0.68 24.33 15 12 O -0.58 -28.98 16.32 -3.80 -0.06 -29.04 15 13 C 0.05 1.75 6.75 41.88 0.28 2.03 15 14 C -0.08 -2.07 9.63 22.60 0.22 -1.85 15 15 C -0.10 -1.69 10.15 22.48 0.23 -1.47 15 16 C 0.07 1.31 7.36 22.58 0.17 1.47 15 17 F -0.12 -1.92 17.28 44.97 0.78 -1.15 15 18 C 0.08 1.56 11.17 84.90 0.95 2.51 15 19 N -0.45 -12.78 9.53 -184.74 -1.76 -14.54 15 20 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 21 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 15 22 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 23 H 0.41 17.00 7.65 -92.71 -0.71 16.29 15 24 H 0.16 3.84 7.64 -2.91 -0.02 3.82 15 25 H 0.19 1.78 8.06 -2.91 -0.02 1.76 15 26 H 0.20 2.67 8.06 -2.91 -0.02 2.64 15 Total: -1.00 -69.79 249.43 2.86 -66.93 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.51 Total: 10.85 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 3.69 Total: 12.09 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -4.08 Total: -104.51 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.06 Total: -29.04 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -69.79 2.86 -66.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129967513.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.515 kcal (2) G-P(sol) polarization free energy of solvation -69.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds