Wall clock time and date at job start Sun Mar 29 2020 22:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36876 * 119.99517 * 2 1 4 4 H 1.08005 * 119.99790 * 153.74651 * 3 2 1 5 5 C 1.39049 * 120.00154 * 333.73397 * 3 2 1 6 6 N 1.31359 * 119.99801 * 348.76658 * 5 3 2 7 7 Si 1.86795 * 119.99659 * 168.76170 * 5 3 2 8 8 H 1.48497 * 109.47511 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47125 * 120.00817 * 7 5 3 10 10 H 1.48508 * 109.47068 * 240.00085 * 7 5 3 11 11 C 1.34776 * 120.00172 * 179.97438 * 2 1 3 12 12 O 1.21584 * 120.00079 * 185.99090 * 11 2 1 13 13 C 1.47728 * 119.99837 * 5.99483 * 11 2 1 14 14 C 1.39640 * 120.55202 * 213.95966 * 13 11 2 15 15 N 1.31635 * 120.61078 * 179.97438 * 14 13 11 16 16 C 1.31950 * 121.91945 * 0.02562 * 15 14 13 17 17 C 1.38552 * 121.05638 * 359.97438 * 16 15 14 18 18 F 1.35102 * 120.37257 * 179.97438 * 17 16 15 19 19 C 1.38598 * 119.26239 * 0.02562 * 17 16 15 20 20 H 1.09000 * 109.47158 * 204.62911 * 1 2 3 21 21 H 1.09005 * 109.47340 * 324.62352 * 1 2 3 22 22 H 1.08991 * 109.47299 * 84.62560 * 1 2 3 23 23 H 0.97002 * 119.99730 * 179.97438 * 6 5 3 24 24 H 1.08001 * 119.69082 * 359.95945 * 14 13 11 25 25 H 1.07999 * 119.47378 * 179.97438 * 16 15 14 26 26 H 1.07997 * 120.87201 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1458 1.2337 0.4138 5 6 1.5617 2.3274 -0.5329 6 7 0.4527 2.2310 -1.2302 7 14 2.3493 3.9986 -0.2570 8 1 3.5824 3.8368 0.5546 9 1 2.6958 4.6050 -1.5675 10 1 1.3961 4.8826 0.4609 11 6 2.1390 -1.1672 0.0005 12 8 3.3498 -1.1700 0.1104 13 6 1.4064 -2.4431 -0.1325 14 6 1.8551 -3.5910 0.5239 15 7 1.2029 -4.7284 0.4066 16 6 0.1111 -4.8342 -0.3268 17 6 -0.3995 -3.7423 -1.0100 18 9 -1.5181 -3.8663 -1.7574 19 6 0.2505 -2.5216 -0.9190 20 1 -0.3633 -0.9342 0.4283 21 1 -0.3634 0.8379 0.5950 22 1 -0.3633 0.0962 -1.0231 23 1 0.0425 3.0278 -1.6017 24 1 2.7455 -3.5452 1.1334 25 1 -0.3925 -5.7870 -0.3957 26 1 -0.1250 -1.6536 -1.4403 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133266724.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:30 Heat of formation + Delta-G solvation = -48.019638 kcal Electronic energy + Delta-G solvation = -14947.361946 eV Core-core repulsion = 12133.614098 eV Total energy + Delta-G solvation = -2813.747848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.02762 -41.56541 -39.78831 -36.85041 -34.36577 -33.09651 -31.95150 -28.41782 -27.15927 -25.10209 -24.57699 -21.54382 -19.20978 -18.70097 -18.22225 -17.95294 -17.45529 -16.84242 -16.56790 -15.93095 -15.80082 -15.04506 -14.69370 -14.53468 -14.26439 -13.78276 -13.30579 -13.21433 -13.16680 -12.70347 -12.54232 -12.11911 -11.22615 -11.10401 -10.88673 -10.43295 -10.06486 -9.77546 -8.43744 -6.10630 -0.42651 -0.11783 1.35731 1.41556 1.55358 1.88158 2.21530 2.56608 2.76907 2.92021 3.07394 3.35181 3.62943 3.69284 3.73253 4.16803 4.42392 4.55338 4.68430 4.86158 4.91474 5.21435 5.37821 5.47499 5.98507 6.34288 6.64175 7.02441 7.26857 7.83396 8.58268 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.044399 B = 0.008075 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.499697 B = 3466.850695 C = 3995.494735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.441 5.441 3 C -0.348 4.348 4 H 0.078 0.922 5 C 0.004 3.996 6 N -0.889 5.889 7 Si 0.995 3.005 8 H -0.271 1.271 9 H -0.274 1.274 10 H -0.264 1.264 11 C 0.473 3.527 12 O -0.622 6.622 13 C -0.138 4.138 14 C 0.132 3.868 15 N -0.465 5.465 16 C 0.095 3.905 17 C 0.047 3.953 18 F -0.124 7.124 19 C -0.091 4.091 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.278 0.722 24 H 0.170 0.830 25 H 0.210 0.790 26 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 -7.958 0.712 10.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.157 5.157 3 C -0.475 4.475 4 H 0.096 0.904 5 C -0.200 4.200 6 N -0.526 5.526 7 Si 0.817 3.183 8 H -0.196 1.196 9 H -0.199 1.199 10 H -0.189 1.189 11 C 0.262 3.738 12 O -0.511 6.511 13 C -0.144 4.144 14 C -0.026 4.026 15 N -0.173 5.173 16 C -0.064 4.064 17 C 0.026 3.974 18 F -0.103 7.103 19 C -0.118 4.118 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.187 0.813 25 H 0.226 0.774 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.374 -8.514 1.083 10.126 hybrid contribution -0.160 1.818 -0.655 1.939 sum -5.534 -6.697 0.428 8.698 Atomic orbital electron populations 1.21820 0.79429 0.99788 1.01954 1.43695 1.06794 1.04611 1.60600 1.19717 1.01730 0.86125 1.39975 0.90402 1.26199 0.96835 1.03176 0.93741 1.69980 1.19776 1.31546 1.31304 0.84857 0.78427 0.76597 0.78371 1.19580 1.19919 1.18882 1.18340 0.86929 0.84039 0.84475 1.90584 1.15289 1.87475 1.57717 1.20894 0.96400 0.96122 1.00961 1.22997 0.98213 0.86116 0.95290 1.67866 1.07187 1.25455 1.16779 1.23613 0.92285 0.99064 0.91429 1.18596 0.86710 0.95189 0.96902 1.91539 1.48397 1.96393 1.73956 1.22240 0.93656 0.98569 0.97299 0.91906 0.92875 0.91732 0.91177 0.81252 0.77385 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.87 7.10 127.77 0.91 5.78 15 2 N -0.44 -22.59 3.00 -662.32 -1.99 -24.57 15 3 C -0.35 -19.34 9.23 84.10 0.78 -18.56 15 4 H 0.08 4.62 7.43 -2.91 -0.02 4.60 15 5 C 0.00 0.20 5.14 84.96 0.44 0.63 15 6 N -0.89 -45.22 10.81 21.68 0.23 -44.99 15 7 Si 0.99 40.95 29.57 68.60 2.03 42.97 15 8 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 10 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 11 C 0.47 23.53 7.34 86.75 0.64 24.16 15 12 O -0.62 -35.38 16.54 -3.98 -0.07 -35.44 15 13 C -0.14 -5.36 5.20 -20.00 -0.10 -5.46 15 14 C 0.13 4.48 10.78 85.06 0.92 5.39 15 15 N -0.47 -13.57 10.34 -194.53 -2.01 -15.58 15 16 C 0.09 2.28 11.16 84.75 0.95 3.23 15 17 C 0.05 1.29 7.33 22.43 0.16 1.46 15 18 F -0.12 -3.17 17.28 44.97 0.78 -2.40 15 19 C -0.09 -3.03 7.69 22.79 0.18 -2.86 15 20 H 0.06 2.30 5.68 -2.39 -0.01 2.28 15 21 H 0.05 2.38 7.53 -2.38 -0.02 2.36 15 22 H 0.06 2.84 6.20 -2.39 -0.01 2.83 15 23 H 0.28 13.14 8.31 -92.71 -0.77 12.37 15 24 H 0.17 5.67 7.99 -2.91 -0.02 5.64 15 25 H 0.21 3.16 8.06 -2.91 -0.02 3.14 15 26 H 0.15 5.33 5.52 -2.91 -0.02 5.31 15 Total: -1.00 -63.16 236.56 5.05 -58.11 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.22 Total: 8.12 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 4.86 Total: 13.78 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.76 Total: -85.14 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.07 Total: -35.44 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -63.16 5.05 -58.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133266724.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.090 kcal (2) G-P(sol) polarization free energy of solvation -63.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds