Wall clock time and date at job start Sun Mar 29 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30614 * 125.42304 * 2 1 4 4 C 1.33694 * 108.99932 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.27680 * 179.73625 * 4 3 2 6 6 C 1.36349 * 107.44972 * 0.02562 * 4 3 2 7 7 C 1.46721 * 126.64211 * 179.97438 * 6 4 3 8 8 O 1.21682 * 120.00302 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99591 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99587 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47018 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99870 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00011 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99912 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00063 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46758 * 59.99926 * 15 13 11 17 17 H 1.48491 * 109.47099 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47285 * 300.00473 * 15 13 11 19 19 O 1.33667 * 125.42454 * 179.97438 * 2 1 3 20 20 H 1.08993 * 109.47697 * 90.02296 * 1 2 3 21 21 H 1.09009 * 109.46695 * 210.02394 * 1 2 3 22 22 H 1.09003 * 109.47046 * 330.01657 * 1 2 3 23 23 H 1.08993 * 109.46745 * 90.02813 * 5 4 3 24 24 H 1.09004 * 109.47211 * 210.02587 * 5 4 3 25 25 H 1.08996 * 109.47085 * 330.02749 * 5 4 3 26 26 H 0.96994 * 120.00539 * 0.02562 * 9 7 6 27 27 H 1.08996 * 109.47547 * 300.00340 * 10 9 7 28 28 H 1.09009 * 109.47295 * 60.00769 * 10 9 7 29 29 H 0.96995 * 119.99663 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 0.0006 5 6 4.7452 1.5996 -0.0048 6 6 3.5708 -0.6769 0.0003 7 6 4.7636 -1.5313 0.0003 8 8 5.8719 -1.0290 0.0009 9 7 4.6316 -2.8727 0.0006 10 6 5.8225 -3.7258 0.0010 11 6 5.4034 -5.1734 0.0007 12 1 4.3549 -5.4320 -0.0003 13 6 6.3587 -6.1677 0.0015 14 7 7.6356 -5.8527 0.0032 15 14 5.8392 -7.9620 0.0018 16 1 5.0299 -8.2431 -1.2111 17 1 7.0464 -8.8267 0.0034 18 1 5.0284 -8.2424 1.2138 19 8 2.2817 -1.0892 0.0005 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3633 -0.8899 0.5143 22 1 -0.3633 0.8902 0.5136 23 1 5.0354 1.8241 1.0215 24 1 5.5729 1.1095 -0.5176 25 1 4.4943 2.5254 -0.5223 26 1 3.7482 -3.2731 0.0005 27 1 6.4174 -3.5199 -0.8888 28 1 6.4169 -3.5196 0.8912 29 1 8.3076 -6.5522 0.0042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159427772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:47 Heat of formation + Delta-G solvation = -29.056086 kcal Electronic energy + Delta-G solvation = -14791.327892 eV Core-core repulsion = 12101.862670 eV Total energy + Delta-G solvation = -2689.465222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.29485 -38.75223 -35.33888 -34.25405 -32.72610 -32.35720 -29.31380 -28.21772 -26.41914 -23.08349 -21.80363 -21.31154 -20.05782 -18.10680 -16.91938 -16.22181 -15.46626 -15.31538 -14.50768 -14.36010 -14.09478 -13.33065 -13.29135 -13.07899 -12.81182 -12.70833 -12.05407 -12.01363 -11.90630 -11.05746 -10.92227 -10.88491 -10.73331 -10.38313 -9.52521 -9.45675 -8.84044 -8.66105 -8.00470 -6.21714 -4.29203 1.03775 2.50415 2.56532 3.23139 3.27888 3.29456 3.59853 3.78904 4.05427 4.32678 4.83233 5.01224 5.14602 5.15088 5.18905 5.44515 5.67313 5.73811 5.81291 5.99454 6.08056 6.45639 7.15513 7.21289 7.40728 7.54667 7.69532 7.88583 8.43880 8.62613 8.86622 9.36935 10.88417 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.039852 B = 0.006145 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.434236 B = 4555.545024 C = 5232.230697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.202 3.798 3 N -0.490 5.490 4 C 0.063 3.937 5 C -0.077 4.077 6 C -0.099 4.099 7 C 0.588 3.412 8 O -0.527 6.527 9 N -0.694 5.694 10 C 0.248 3.752 11 C -0.547 4.547 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 O -0.188 6.188 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.396 0.604 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 9.670 -0.036 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.004 4.004 3 N -0.221 5.221 4 C -0.061 4.061 5 C -0.134 4.134 6 C -0.155 4.155 7 C 0.371 3.629 8 O -0.407 6.407 9 N -0.341 5.341 10 C 0.128 3.872 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 O -0.074 6.074 20 H 0.113 0.887 21 H 0.109 0.891 22 H 0.120 0.880 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.229 0.771 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.754 10.422 -0.035 15.709 hybrid contribution -0.459 -1.908 0.014 1.963 sum -12.214 8.514 -0.021 14.888 Atomic orbital electron populations 1.20304 0.81096 1.05264 1.04836 1.26433 0.96595 0.78910 0.98417 1.70268 1.01775 1.30062 1.20023 1.22002 0.93248 0.91473 0.99344 1.20342 0.92439 0.97106 1.03511 1.23478 0.82363 0.95516 1.14107 1.16457 0.84971 0.82503 0.78922 1.90815 1.23450 1.73969 1.52445 1.46478 1.12716 1.04670 1.70245 1.19259 0.81870 0.87845 0.98240 1.21159 0.93481 0.90114 1.53746 0.91827 1.24942 0.94694 0.99726 0.94528 1.69959 0.99858 1.33815 1.48546 0.86436 0.78042 0.83479 0.78753 1.20008 1.20994 1.20018 1.84457 1.16469 1.37165 1.69322 0.88701 0.89066 0.88038 0.90298 0.88479 0.90923 0.77080 0.94923 0.94912 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.06 15 2 C 0.20 2.75 8.32 -12.80 -0.11 2.65 15 3 N -0.49 -7.66 11.26 -7.07 -0.08 -7.74 15 4 C 0.06 1.07 7.16 -82.46 -0.59 0.48 15 5 C -0.08 -1.12 9.88 36.01 0.36 -0.77 15 6 C -0.10 -1.82 7.18 -36.84 -0.26 -2.08 15 7 C 0.59 12.52 7.79 -12.83 -0.10 12.42 15 8 O -0.53 -12.40 14.79 5.20 0.08 -12.33 15 9 N -0.69 -15.27 5.54 -62.78 -0.35 -15.61 15 10 C 0.25 6.53 5.43 -5.19 -0.03 6.50 15 11 C -0.55 -14.80 9.28 -34.44 -0.32 -15.12 15 12 H 0.06 1.62 7.60 -52.49 -0.40 1.22 15 13 C 0.07 1.79 5.46 -17.82 -0.10 1.70 15 14 N -0.88 -25.74 13.29 55.43 0.74 -25.01 15 15 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 15 16 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 19 O -0.19 -3.02 10.57 4.42 0.05 -2.97 15 20 H 0.09 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.09 0.55 8.14 -51.92 -0.42 0.13 15 22 H 0.10 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.10 1.55 6.46 -51.93 -0.34 1.22 15 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.40 7.81 8.12 -40.82 -0.33 7.47 15 27 H 0.03 0.94 8.14 -51.93 -0.42 0.51 15 28 H 0.03 0.94 8.14 -51.92 -0.42 0.52 15 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -31.78 264.78 -4.53 -36.31 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.16 Total: 1.95 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.77 Total: 5.72 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.31 Total: -48.36 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.12 Total: -15.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.78 -4.53 -36.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159427772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.253 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds