Wall clock time and date at job start Sun Mar 29 2020 22:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00054 * 2 1 4 4 C 1.38764 * 120.04065 * 359.97380 * 3 2 1 5 5 C 1.38135 * 119.99501 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.07772 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.95819 * 179.97438 * 6 5 4 8 8 C 1.38475 * 120.08149 * 359.74642 * 6 5 4 9 9 F 1.35108 * 119.99592 * 180.25608 * 8 6 5 10 10 C 1.38385 * 120.00641 * 0.51011 * 8 6 5 11 11 C 1.50700 * 120.03797 * 179.77123 * 10 8 6 12 12 C 1.50702 * 109.46869 * 269.71882 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 H 1.09006 * 109.47183 * 60.00062 * 1 2 3 21 21 H 1.08997 * 109.47745 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47149 * 300.00455 * 1 2 3 23 23 H 1.07996 * 120.00854 * 0.04300 * 4 3 2 24 24 H 1.07995 * 119.96652 * 179.97438 * 5 4 3 25 25 H 1.09001 * 109.46759 * 89.99779 * 7 6 5 26 26 H 1.08994 * 109.47074 * 209.99536 * 7 6 5 27 27 H 1.08995 * 109.47004 * 330.00217 * 7 6 5 28 28 H 1.09004 * 109.47210 * 149.72175 * 11 10 8 29 29 H 1.08994 * 109.47551 * 29.71828 * 11 10 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2911 2.3752 -0.0005 5 6 1.9192 3.6055 -0.0011 6 6 3.2998 3.6786 -0.0005 7 6 3.9823 5.0223 -0.0017 8 6 4.0563 2.5188 0.0059 9 9 5.4054 2.5923 0.0116 10 6 3.4307 1.2844 0.0010 11 6 4.2533 0.0217 0.0028 12 6 4.5281 -0.4006 -1.4175 13 1 4.1457 0.1867 -2.2392 14 6 5.2730 -1.5336 -1.6680 15 7 5.7389 -2.2486 -0.6673 16 14 5.6201 -2.0529 -3.4284 17 1 4.9894 -1.0865 -4.3630 18 1 7.0872 -2.0768 -3.6573 19 1 5.0602 -3.4079 -3.6644 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.2125 2.3196 -0.0003 24 1 1.3312 4.5114 -0.0019 25 1 4.1463 5.3473 1.0257 26 1 4.9405 4.9426 -0.5149 27 1 3.3535 5.7486 -0.5166 28 1 3.7056 -0.7680 0.5172 29 1 5.1970 0.2036 0.5168 30 1 6.2627 -3.0459 -0.8436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214721175.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:02 Heat of formation + Delta-G solvation = -71.567795 kcal Electronic energy + Delta-G solvation = -15271.754601 eV Core-core repulsion = 12560.525971 eV Total energy + Delta-G solvation = -2711.228629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.10645 -39.60348 -36.95195 -33.64690 -31.82218 -30.64792 -27.47830 -27.17755 -25.52104 -23.39988 -21.15890 -20.20327 -17.78367 -16.52533 -16.32357 -15.34539 -15.27080 -14.75752 -14.71933 -14.22788 -14.03827 -13.01338 -12.77575 -12.51817 -12.34147 -12.19210 -11.68703 -11.50609 -11.42284 -10.98627 -10.91035 -10.43674 -10.41086 -10.34923 -9.54186 -9.36704 -8.33179 -7.94341 -7.48076 -5.94673 -3.96864 1.72939 1.85559 3.34959 3.41608 3.47056 3.73311 4.12527 4.52765 4.94828 5.13722 5.27218 5.29059 5.40925 5.42859 5.50566 5.62757 5.74072 5.83643 5.90854 6.17869 6.20654 6.48582 6.57134 6.79491 6.90973 7.33505 7.64647 7.77126 7.95446 8.00532 8.39613 9.05508 9.64787 11.15699 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.010243 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.260628 B = 2733.022985 C = 3473.556797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.144 3.856 4 C -0.221 4.221 5 C -0.082 4.082 6 C -0.165 4.165 7 C -0.102 4.102 8 C 0.127 3.873 9 F -0.130 7.130 10 C -0.100 4.100 11 C 0.058 3.942 12 C -0.501 4.501 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.050 0.950 21 H 0.096 0.904 22 H 0.048 0.952 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 9.991 1.969 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C 0.098 3.902 4 C -0.240 4.240 5 C -0.100 4.100 6 C -0.166 4.166 7 C -0.159 4.159 8 C 0.108 3.892 9 F -0.108 7.108 10 C -0.101 4.101 11 C 0.021 3.979 12 C -0.540 4.540 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.069 0.931 21 H 0.114 0.886 22 H 0.067 0.933 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.020 9.639 2.005 13.353 hybrid contribution 0.138 -0.244 -0.983 1.022 sum -8.882 9.395 1.022 12.969 Atomic orbital electron populations 1.22997 0.79764 1.03487 1.00525 1.86280 1.19866 1.26191 1.88108 1.18525 0.91298 0.84079 0.96298 1.21121 0.99591 0.92317 1.10983 1.20359 0.92681 0.96837 1.00151 1.19716 0.94070 0.94401 1.08391 1.20570 1.00423 0.93021 1.01893 1.17036 0.77059 0.92620 1.02484 1.91459 1.28848 1.96923 1.93569 1.20035 0.91961 0.97115 1.01006 1.18148 0.93741 0.87785 0.98223 1.21002 1.32590 1.09206 0.91164 0.92759 1.24967 0.95793 0.96387 0.97123 1.69971 1.36241 1.16694 1.30459 0.86494 0.77954 0.78402 0.84940 1.19766 1.20970 1.20980 0.93135 0.88599 0.93313 0.85770 0.85884 0.91728 0.91581 0.91813 0.94262 0.95083 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.29 -5.91 9.54 -19.43 -0.19 -6.10 16 3 C 0.14 2.94 6.66 -39.23 -0.26 2.68 16 4 C -0.22 -3.62 9.04 -39.42 -0.36 -3.98 16 5 C -0.08 -1.26 9.69 -39.61 -0.38 -1.65 16 6 C -0.16 -2.85 5.89 -104.53 -0.62 -3.47 16 7 C -0.10 -1.40 9.83 36.01 0.35 -1.04 16 8 C 0.13 2.73 7.18 -39.44 -0.28 2.45 16 9 F -0.13 -2.92 15.68 2.25 0.04 -2.89 16 10 C -0.10 -2.34 5.09 -104.41 -0.53 -2.87 16 11 C 0.06 1.60 4.71 -29.03 -0.14 1.46 16 12 C -0.50 -14.85 9.09 -34.44 -0.31 -15.16 16 13 H 0.05 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 16 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 23 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 24 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.94 7.64 -51.93 -0.40 0.54 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.04 1.14 7.53 -51.93 -0.39 0.75 16 29 H 0.03 0.91 7.63 -51.93 -0.40 0.51 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 264.71 15.07 3.99 3.99 Total: -1.00 -32.59 264.71 -5.62 -38.20 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: -3.54 Total: -5.31 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.63 Total: -18.58 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.19 Total: -6.10 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.59 -5.62 -38.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214721175.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.363 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds