Wall clock time and date at job start Sun Mar 29 2020 22:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00054 * 2 1 4 4 C 1.38764 * 120.04065 * 359.97380 * 3 2 1 5 5 C 1.38135 * 119.99501 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.07772 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.95819 * 179.97438 * 6 5 4 8 8 C 1.38475 * 120.08149 * 359.74642 * 6 5 4 9 9 F 1.35108 * 119.99592 * 180.25608 * 8 6 5 10 10 C 1.38385 * 120.00641 * 0.51011 * 8 6 5 11 11 C 1.50700 * 120.03797 * 179.77123 * 10 8 6 12 12 C 1.50702 * 109.46869 * 269.71882 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 H 1.09006 * 109.47183 * 60.00062 * 1 2 3 21 21 H 1.08997 * 109.47745 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47149 * 300.00455 * 1 2 3 23 23 H 1.07996 * 120.00854 * 0.04300 * 4 3 2 24 24 H 1.07995 * 119.96652 * 179.97438 * 5 4 3 25 25 H 1.09001 * 109.46759 * 89.99779 * 7 6 5 26 26 H 1.08994 * 109.47074 * 209.99536 * 7 6 5 27 27 H 1.08995 * 109.47004 * 330.00217 * 7 6 5 28 28 H 1.09004 * 109.47210 * 149.72175 * 11 10 8 29 29 H 1.08994 * 109.47551 * 29.71828 * 11 10 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2911 2.3752 -0.0005 5 6 1.9192 3.6055 -0.0011 6 6 3.2998 3.6786 -0.0005 7 6 3.9823 5.0223 -0.0017 8 6 4.0563 2.5188 0.0059 9 9 5.4054 2.5923 0.0116 10 6 3.4307 1.2844 0.0010 11 6 4.2533 0.0217 0.0028 12 6 4.5281 -0.4006 -1.4175 13 1 4.1457 0.1867 -2.2392 14 6 5.2730 -1.5336 -1.6680 15 7 5.7389 -2.2486 -0.6673 16 14 5.6201 -2.0529 -3.4284 17 1 4.9894 -1.0865 -4.3630 18 1 7.0872 -2.0768 -3.6573 19 1 5.0602 -3.4079 -3.6644 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.2125 2.3196 -0.0003 24 1 1.3312 4.5114 -0.0019 25 1 4.1463 5.3473 1.0257 26 1 4.9405 4.9426 -0.5149 27 1 3.3535 5.7486 -0.5166 28 1 3.7056 -0.7680 0.5172 29 1 5.1970 0.2036 0.5168 30 1 6.2627 -3.0459 -0.8436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214721175.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:02 Heat of formation + Delta-G solvation = -92.362704 kcal Electronic energy + Delta-G solvation = -15272.656335 eV Core-core repulsion = 12560.525971 eV Total energy + Delta-G solvation = -2712.130364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.77249 -41.02290 -38.33080 -35.66709 -33.59546 -32.08849 -29.19439 -28.57261 -26.76421 -25.42253 -22.63371 -21.78800 -19.20528 -18.58450 -18.01146 -16.86200 -16.76893 -16.62735 -16.22688 -15.73945 -15.38962 -14.47499 -14.27344 -14.14623 -13.85779 -13.76889 -13.27221 -13.02492 -12.79063 -12.66533 -12.60722 -12.29236 -12.19102 -11.65061 -11.51678 -11.33618 -10.62873 -9.51981 -8.93280 -8.20614 -6.34125 0.27439 0.43242 1.34706 1.36651 1.49924 2.37125 2.44280 2.71673 3.08699 3.55730 3.89820 3.98095 4.06339 4.34974 4.45911 4.46724 4.55783 4.73815 4.78923 4.84666 4.96325 5.14446 5.17725 5.32709 5.35071 5.47419 5.65898 5.70279 5.94874 6.14167 6.61015 6.75583 7.32570 8.89208 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.010243 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.260628 B = 2733.022985 C = 3473.556797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.130 3.870 4 C -0.205 4.205 5 C -0.062 4.062 6 C -0.161 4.161 7 C -0.101 4.101 8 C 0.097 3.903 9 F -0.150 7.150 10 C -0.151 4.151 11 C 0.073 3.927 12 C -0.520 4.520 13 H 0.047 0.953 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.969 3.031 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.271 1.271 20 H 0.069 0.931 21 H 0.108 0.892 22 H 0.074 0.926 23 H 0.168 0.832 24 H 0.178 0.822 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.007 0.993 29 H -0.007 1.007 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 12.224 0.838 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.084 3.916 4 C -0.223 4.223 5 C -0.079 4.079 6 C -0.162 4.162 7 C -0.158 4.158 8 C 0.078 3.922 9 F -0.128 7.128 10 C -0.152 4.152 11 C 0.036 3.964 12 C -0.558 4.558 13 H 0.066 0.934 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.197 1.197 20 H 0.088 0.912 21 H 0.126 0.874 22 H 0.093 0.907 23 H 0.185 0.815 24 H 0.196 0.804 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.025 0.975 29 H 0.011 0.989 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.443 11.881 0.881 16.519 hybrid contribution 0.780 -0.893 -0.563 1.313 sum -10.663 10.988 0.318 15.314 Atomic orbital electron populations 1.23376 0.76504 1.05230 1.02604 1.86215 1.23426 1.26983 1.88267 1.18695 0.90471 0.85720 0.96724 1.21575 1.01447 0.90933 1.08390 1.21025 0.91962 0.98435 0.96513 1.20184 0.95054 0.94336 1.06664 1.20674 1.00196 0.91571 1.03310 1.17477 0.76628 0.93721 1.04397 1.91392 1.30431 1.97039 1.93987 1.19841 0.93554 0.95878 1.05975 1.17706 0.92344 0.89644 0.96675 1.21276 1.32986 1.09626 0.91943 0.93433 1.25971 0.95270 0.96227 1.02165 1.70104 1.36772 1.17209 1.33047 0.85348 0.78161 0.78352 0.78893 1.18982 1.19976 1.19656 0.91230 0.87360 0.90731 0.81485 0.80427 0.90077 0.92907 0.88216 0.97514 0.98919 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.34 -13.75 9.54 -92.45 -0.88 -14.63 16 3 C 0.13 5.30 6.66 22.50 0.15 5.45 16 4 C -0.21 -5.96 9.04 22.37 0.20 -5.76 16 5 C -0.06 -1.60 9.69 22.25 0.22 -1.38 16 6 C -0.16 -5.22 5.89 -19.80 -0.12 -5.33 16 7 C -0.10 -2.43 9.83 71.24 0.70 -1.73 16 8 C 0.10 4.27 7.18 22.36 0.16 4.43 16 9 F -0.15 -7.18 15.68 44.97 0.71 -6.47 16 10 C -0.15 -7.43 5.09 -19.73 -0.10 -7.53 16 11 C 0.07 4.39 4.71 29.10 0.14 4.53 16 12 C -0.52 -32.49 9.09 25.60 0.23 -32.26 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.93 -59.71 13.29 21.45 0.28 -59.43 16 16 Si 0.97 47.03 29.54 68.60 2.03 49.05 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H 0.07 1.46 7.66 -2.38 -0.02 1.44 16 21 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.07 1.46 7.66 -2.38 -0.02 1.44 16 23 H 0.17 3.37 6.30 -2.91 -0.02 3.36 16 24 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.41 7.64 -2.39 -0.02 1.40 16 27 H 0.10 1.69 8.08 -2.39 -0.02 1.67 16 28 H 0.01 0.42 7.53 -2.38 -0.02 0.40 16 29 H -0.01 -0.49 7.63 -2.39 -0.02 -0.50 16 30 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -77.21 264.71 6.43 -70.79 By element: Atomic # 1 Polarization: -2.96 SS G_CDS: 1.14 Total: -1.82 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.16 Total: -37.50 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.28 Total: -59.43 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.88 Total: -14.63 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.71 Total: -6.47 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -77.21 6.43 -70.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214721175.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.575 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds