Wall clock time and date at job start Sun Mar 29 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38239 * 120.00487 * 100.00100 * 12 11 10 14 14 C 1.38220 * 120.01336 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.02394 * 0.03851 * 14 13 12 16 16 C 1.38197 * 120.01707 * 359.97438 * 15 14 13 17 17 C 1.38331 * 120.00622 * 279.72913 * 12 11 10 18 18 Cl 1.73596 * 120.01445 * 359.97409 * 17 12 11 19 19 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 21 21 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 22 22 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 23 23 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 26 26 H 1.08002 * 119.99356 * 359.97438 * 13 12 11 27 27 H 1.08000 * 119.98661 * 180.02562 * 14 13 12 28 28 H 1.07999 * 119.99473 * 179.97438 * 15 14 13 29 29 H 1.07998 * 120.00665 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.7518 -6.7930 1.1793 14 6 3.6496 -7.8439 1.1788 15 6 4.2566 -8.2347 -0.0003 16 6 3.9656 -7.5750 -1.1793 17 6 3.0623 -6.5268 -1.1805 18 17 2.6901 -5.7029 -2.6625 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8905 23 1 2.8720 -3.6042 -0.8894 24 1 0.8534 -5.0451 -0.8886 25 1 0.8541 -5.0445 0.8914 26 1 2.2784 -6.4877 2.1008 27 1 3.8771 -8.3598 2.0999 28 1 4.9583 -9.0556 -0.0001 29 1 4.4396 -7.8807 -2.1004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216348587.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:05 Heat of formation + Delta-G solvation = -10.468178 kcal Electronic energy + Delta-G solvation = -12549.894911 eV Core-core repulsion = 10269.652135 eV Total energy + Delta-G solvation = -2280.242776 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.33522 -36.19438 -34.77491 -32.64125 -30.69692 -30.24796 -26.74765 -23.65799 -22.60531 -21.20322 -19.99691 -16.95254 -16.16446 -15.62956 -15.19556 -14.45201 -13.79198 -13.61933 -13.50753 -13.16835 -12.24242 -11.95543 -11.59765 -11.40375 -11.34493 -11.08096 -10.77504 -10.67788 -10.60892 -10.33498 -9.59389 -9.32569 -9.09309 -8.76973 -8.40939 -8.29536 -5.95125 -3.96968 1.24294 1.35398 2.37465 3.36443 3.40338 3.43313 3.70886 4.49999 4.84860 4.87983 5.01874 5.33268 5.40466 5.44172 5.68901 5.82263 5.96085 6.09328 6.27213 6.39943 6.43859 6.48813 6.85625 6.88468 6.94639 7.19868 7.73326 7.89008 8.05670 8.48798 9.09916 9.66566 11.16235 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.039918 B = 0.006048 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.278215 B = 4628.522101 C = 4883.425951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.103 4.103 11 C -0.089 4.089 12 C -0.056 4.056 13 C -0.110 4.110 14 C -0.116 4.116 15 C -0.125 4.125 16 C -0.112 4.112 17 C -0.037 4.037 18 Cl -0.063 7.063 19 H 0.260 0.740 20 H 0.016 0.984 21 H 0.015 0.985 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.293 -16.087 -0.363 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.140 4.140 11 C -0.126 4.126 12 C -0.057 4.057 13 C -0.129 4.129 14 C -0.134 4.134 15 C -0.143 4.143 16 C -0.131 4.131 17 C -0.064 4.064 18 Cl -0.034 7.034 19 H 0.070 0.930 20 H 0.035 0.965 21 H 0.033 0.967 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.100 -15.887 -0.502 17.025 hybrid contribution 0.467 1.004 -0.126 1.114 sum 6.567 -14.883 -0.628 16.279 Atomic orbital electron populations 1.69957 1.06019 1.26603 1.51044 1.25018 0.94838 0.99168 0.95443 0.86678 0.79598 0.83237 0.78608 1.20269 1.21316 1.20271 1.21229 0.92995 0.91124 1.50323 0.92815 1.19089 0.93951 0.91213 0.97171 1.21615 0.99090 0.92636 1.00678 1.20878 0.96148 0.92581 1.03005 1.20142 0.97379 0.96757 0.91372 1.21102 0.98489 0.95769 0.97509 1.21202 0.96862 0.97224 0.98157 1.21003 1.00724 1.00366 0.92220 1.21015 0.97592 0.95320 0.99128 1.20893 1.00564 0.96897 0.88011 1.98379 1.93583 1.78130 1.33331 0.93017 0.96541 0.96676 0.93489 0.92815 0.90664 0.91113 0.85164 0.85788 0.85635 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 15 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 15 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 15 10 C -0.10 -2.19 5.09 -26.74 -0.14 -2.33 15 11 C -0.09 -1.57 4.80 -27.88 -0.13 -1.71 15 12 C -0.06 -0.87 5.14 -104.59 -0.54 -1.40 15 13 C -0.11 -1.47 9.67 -39.59 -0.38 -1.85 15 14 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 15 15 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 15 16 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 15 17 C -0.04 -0.55 6.31 -39.50 -0.25 -0.80 15 18 Cl -0.06 -0.99 26.66 -51.86 -1.38 -2.37 15 19 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 20 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.05 1.16 7.30 -51.93 -0.38 0.78 15 24 H 0.07 1.35 7.34 -51.93 -0.38 0.97 15 25 H 0.07 1.19 8.01 -51.93 -0.42 0.77 15 26 H 0.13 1.54 8.04 -52.49 -0.42 1.12 15 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 15 28 H 0.13 1.01 8.06 -52.49 -0.42 0.58 15 29 H 0.13 1.34 8.06 -52.49 -0.42 0.91 15 LS Contribution 266.61 15.07 4.02 4.02 Total: -1.00 -30.80 266.61 -8.50 -39.30 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -3.68 Total: -4.67 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -3.17 Total: -26.68 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.74 Total: -26.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.38 Total: -2.37 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.80 -8.50 -39.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216348587.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.829 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds