Wall clock time and date at job start Sun Mar 29 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38239 * 120.00487 * 100.00100 * 12 11 10 14 14 C 1.38220 * 120.01336 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.02394 * 0.03851 * 14 13 12 16 16 C 1.38197 * 120.01707 * 359.97438 * 15 14 13 17 17 C 1.38331 * 120.00622 * 279.72913 * 12 11 10 18 18 Cl 1.73596 * 120.01445 * 359.97409 * 17 12 11 19 19 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 21 21 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 22 22 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 23 23 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 26 26 H 1.08002 * 119.99356 * 359.97438 * 13 12 11 27 27 H 1.08000 * 119.98661 * 180.02562 * 14 13 12 28 28 H 1.07999 * 119.99473 * 179.97438 * 15 14 13 29 29 H 1.07998 * 120.00665 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.7518 -6.7930 1.1793 14 6 3.6496 -7.8439 1.1788 15 6 4.2566 -8.2347 -0.0003 16 6 3.9656 -7.5750 -1.1793 17 6 3.0623 -6.5268 -1.1805 18 17 2.6901 -5.7029 -2.6625 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8905 23 1 2.8720 -3.6042 -0.8894 24 1 0.8534 -5.0451 -0.8886 25 1 0.8541 -5.0445 0.8914 26 1 2.2784 -6.4877 2.1008 27 1 3.8771 -8.3598 2.0999 28 1 4.9583 -9.0556 -0.0001 29 1 4.4396 -7.8807 -2.1004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216348587.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:05 Heat of formation + Delta-G solvation = -26.545655 kcal Electronic energy + Delta-G solvation = -12550.592083 eV Core-core repulsion = 10269.652135 eV Total energy + Delta-G solvation = -2280.939948 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36636 -37.32162 -36.49027 -34.55666 -31.96282 -31.55209 -28.46942 -25.44707 -23.58373 -22.64825 -21.62908 -18.53037 -17.79018 -16.80161 -16.57656 -16.15636 -15.26930 -14.80087 -14.72073 -14.56270 -13.93937 -13.69298 -13.18253 -12.68604 -12.66733 -12.65744 -12.37425 -12.31363 -12.17701 -11.74338 -11.42699 -11.28442 -11.10739 -10.54719 -9.79005 -9.52730 -8.19778 -6.30969 0.25198 0.36777 1.27461 1.38552 1.42036 1.49957 2.40650 2.73267 3.12726 3.79936 3.86493 4.13036 4.30249 4.46696 4.50554 4.55051 4.62350 4.87569 4.95736 5.08470 5.18517 5.25292 5.36396 5.49596 5.52494 5.55794 5.77798 5.85608 5.95264 6.26035 6.85243 7.37818 8.91814 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.039918 B = 0.006048 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.278215 B = 4628.522101 C = 4883.425951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.087 4.087 11 C -0.078 4.078 12 C -0.082 4.082 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.055 4.055 18 Cl -0.083 7.083 19 H 0.264 0.736 20 H -0.011 1.011 21 H -0.006 1.006 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 -17.265 0.405 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.124 4.124 11 C -0.116 4.116 12 C -0.083 4.083 13 C -0.136 4.136 14 C -0.128 4.128 15 C -0.131 4.131 16 C -0.135 4.135 17 C -0.082 4.082 18 Cl -0.054 7.054 19 H 0.073 0.927 20 H 0.008 0.992 21 H 0.012 0.988 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.158 0.842 27 H 0.176 0.824 28 H 0.181 0.819 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.065 -17.079 0.268 18.890 hybrid contribution -0.131 1.273 -0.333 1.322 sum 7.934 -15.806 -0.065 17.686 Atomic orbital electron populations 1.70092 1.07754 1.27821 1.51663 1.25982 0.95797 1.03314 0.94720 0.85521 0.78331 0.78142 0.79191 1.19355 1.20621 1.19019 1.21664 0.93419 0.92523 1.50592 0.92519 1.18988 0.94332 0.92927 0.94767 1.21353 0.97906 0.92862 1.00319 1.20626 0.96373 0.91899 1.02684 1.19972 0.98293 0.97201 0.92850 1.21323 0.99067 0.96300 0.96938 1.21613 0.95315 0.96072 0.99795 1.21487 1.00134 1.00305 0.91183 1.21326 0.96829 0.94467 1.00835 1.21105 1.01897 0.98051 0.87121 1.98367 1.93843 1.78743 1.34463 0.92743 0.99224 0.98757 0.93364 0.93396 0.91791 0.90707 0.84228 0.82381 0.81897 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.29 21.45 0.28 -57.90 15 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 15 3 Si 0.96 45.41 29.54 68.60 2.03 47.44 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 7 C -0.54 -32.22 9.11 25.60 0.23 -31.98 15 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 15 9 C 0.03 1.48 4.97 29.84 0.15 1.63 15 10 C -0.09 -3.81 5.09 30.59 0.16 -3.65 15 11 C -0.08 -2.85 4.80 29.85 0.14 -2.70 15 12 C -0.08 -2.52 5.14 -19.84 -0.10 -2.62 15 13 C -0.12 -2.90 9.67 22.27 0.22 -2.69 15 14 C -0.11 -2.05 10.05 22.27 0.22 -1.82 15 15 C -0.11 -2.00 10.05 22.27 0.22 -1.77 15 16 C -0.12 -2.59 9.83 22.29 0.22 -2.37 15 17 C -0.06 -1.61 6.31 22.32 0.14 -1.47 15 18 Cl -0.08 -2.63 26.66 -2.72 -0.07 -2.70 15 19 H 0.26 15.42 8.31 -92.71 -0.77 14.65 15 20 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 21 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 22 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.05 2.13 7.30 -2.39 -0.02 2.11 15 24 H 0.06 2.41 7.34 -2.39 -0.02 2.40 15 25 H 0.07 2.58 8.01 -2.39 -0.02 2.56 15 26 H 0.14 3.06 8.04 -2.91 -0.02 3.04 15 27 H 0.16 1.87 8.06 -2.91 -0.02 1.84 15 28 H 0.16 1.68 8.06 -2.91 -0.02 1.66 15 29 H 0.15 2.66 8.06 -2.91 -0.02 2.64 15 Total: -1.00 -67.35 266.61 5.42 -61.93 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: 1.12 Total: 0.26 kcal Atomic # 6 Polarization: -51.08 SS G_CDS: 2.06 Total: -49.02 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.28 Total: -57.90 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.07 Total: -2.70 kcal Total: -67.35 5.42 -61.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216348587.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.384 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds