Wall clock time and date at job start Sun Mar 29 2020 22:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36802 * 119.99771 * 2 1 4 4 H 1.07995 * 119.99559 * 197.40304 * 3 2 1 5 5 C 1.39105 * 119.99910 * 17.40040 * 3 2 1 6 6 N 1.31325 * 120.00061 * 17.83102 * 5 3 2 7 7 Si 1.86803 * 119.99851 * 197.82995 * 5 3 2 8 8 H 1.48497 * 109.46972 * 60.00060 * 7 5 3 9 9 H 1.48496 * 109.47091 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46938 * 300.00124 * 7 5 3 11 11 C 1.34767 * 120.00119 * 179.97438 * 2 1 3 12 12 O 1.21561 * 120.00009 * 183.92756 * 11 2 1 13 13 C 1.48001 * 120.00184 * 3.92506 * 11 2 1 14 14 C 1.40000 * 120.91446 * 138.71414 * 13 11 2 15 15 C 1.37990 * 119.05573 * 180.02562 * 14 13 11 16 16 N 1.31909 * 120.94743 * 0.02742 * 15 14 13 17 17 C 1.31990 * 122.02261 * 359.67572 * 16 15 14 18 18 F 1.35100 * 119.57796 * 180.28877 * 17 16 15 19 19 C 1.38479 * 120.83792 * 0.59317 * 17 16 15 20 20 H 1.09000 * 109.46699 * 273.39944 * 1 2 3 21 21 H 1.08997 * 109.46970 * 33.39908 * 1 2 3 22 22 H 1.09003 * 109.47061 * 153.39905 * 1 2 3 23 23 H 0.97001 * 119.99828 * 179.97438 * 6 5 3 24 24 H 1.07996 * 120.47115 * 0.02562 * 14 13 11 25 25 H 1.08004 * 119.52745 * 180.02562 * 15 14 13 26 26 H 1.07999 * 120.51320 * 179.72729 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1848 0.0000 4 1 3.1919 1.2061 -0.2797 5 6 1.5012 2.3619 0.3603 6 7 0.3694 2.3116 1.0245 7 14 2.2411 4.0140 -0.1008 8 1 2.3606 4.1078 -1.5780 9 1 1.3644 5.1048 0.3957 10 1 3.5868 4.1425 0.5138 11 6 2.1389 -1.1671 0.0005 12 8 3.3524 -1.1683 0.0726 13 6 1.4016 -2.4474 -0.0866 14 6 1.8709 -3.4946 -0.8886 15 6 1.1527 -4.6716 -0.9419 16 7 0.0383 -4.8182 -0.2515 17 6 -0.4374 -3.8597 0.5213 18 9 -1.5805 -4.0651 1.2114 19 6 0.2171 -2.6441 0.6289 20 1 -0.3633 0.0609 1.0259 21 1 -0.3633 0.8579 -0.5657 22 1 -0.3633 -0.9189 -0.4602 23 1 -0.0821 3.1325 1.2760 24 1 2.7822 -3.3828 -1.4573 25 1 1.5081 -5.4846 -1.5578 26 1 -0.1792 -1.8619 1.2594 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227422214.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:37 Heat of formation + Delta-G solvation = -42.270599 kcal Electronic energy + Delta-G solvation = -14927.141547 eV Core-core repulsion = 12113.642996 eV Total energy + Delta-G solvation = -2813.498551 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.09442 -41.54394 -39.83101 -36.88196 -34.38559 -33.24405 -31.94041 -28.44117 -27.26746 -25.10489 -24.56254 -21.59860 -19.28508 -18.86881 -18.25413 -17.55450 -17.17122 -17.08255 -16.59933 -15.96056 -15.92126 -15.08584 -14.71012 -14.41805 -14.19247 -13.80784 -13.56871 -13.25245 -12.98948 -12.64300 -12.49954 -12.15549 -11.21216 -11.09094 -10.96729 -10.44108 -10.09091 -9.90126 -8.48736 -6.05790 -0.32713 -0.15732 1.37350 1.41617 1.52114 1.86753 2.19512 2.44436 2.56666 2.78856 3.01030 3.44314 3.77416 3.81012 3.87275 4.37632 4.46895 4.54531 4.72311 4.87339 5.05516 5.20666 5.35691 5.49707 5.91312 6.30560 6.51306 6.99494 7.24703 7.81175 8.53102 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.045191 B = 0.007912 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.439680 B = 3538.200948 C = 4030.353712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.432 5.432 3 C -0.353 4.353 4 H 0.083 0.917 5 C 0.005 3.995 6 N -0.881 5.881 7 Si 0.995 3.005 8 H -0.265 1.265 9 H -0.268 1.268 10 H -0.273 1.273 11 C 0.454 3.546 12 O -0.625 6.625 13 C -0.040 4.040 14 C -0.141 4.141 15 C 0.149 3.851 16 N -0.522 5.522 17 C 0.297 3.703 18 F -0.113 7.113 19 C -0.176 4.176 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.281 0.719 24 H 0.159 0.841 25 H 0.219 0.781 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -7.415 -3.758 8.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.147 5.147 3 C -0.480 4.480 4 H 0.101 0.899 5 C -0.199 4.199 6 N -0.517 5.517 7 Si 0.817 3.183 8 H -0.190 1.190 9 H -0.192 1.192 10 H -0.198 1.198 11 C 0.244 3.756 12 O -0.514 6.514 13 C -0.051 4.051 14 C -0.162 4.162 15 C -0.007 4.007 16 N -0.237 5.237 17 C 0.145 3.855 18 F -0.093 7.093 19 C -0.198 4.198 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.176 0.824 25 H 0.236 0.764 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.556 -7.991 -3.640 9.474 hybrid contribution 0.428 1.738 0.379 1.830 sum -3.128 -6.254 -3.261 7.715 Atomic orbital electron populations 1.21852 0.79156 1.00384 1.01783 1.43784 1.07016 1.04738 1.59179 1.19728 0.97332 0.84259 1.46698 0.89947 1.26185 0.96687 1.02988 0.94076 1.70041 1.17878 1.30853 1.32957 0.84974 0.78176 0.75975 0.79144 1.18959 1.19250 1.19841 1.18344 0.87221 0.83862 0.86137 1.90585 1.14981 1.87182 1.58681 1.20341 0.93419 0.95218 0.96122 1.22509 1.02088 0.92876 0.98738 1.23126 0.86921 0.96732 0.93887 1.66982 1.16042 1.32090 1.08615 1.17924 0.84435 0.90351 0.92806 1.91607 1.46279 1.95339 1.76031 1.22191 0.96204 0.98117 1.03248 0.92320 0.92179 0.91678 0.90943 0.82357 0.76439 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.82 7.21 127.77 0.92 5.75 15 2 N -0.43 -22.06 3.02 -662.05 -2.00 -24.06 15 3 C -0.35 -19.46 9.33 84.13 0.78 -18.67 15 4 H 0.08 4.82 7.39 -2.91 -0.02 4.80 15 5 C 0.01 0.26 5.00 84.98 0.43 0.68 15 6 N -0.88 -44.52 10.67 21.69 0.23 -44.28 15 7 Si 1.00 40.23 29.59 68.60 2.03 42.26 15 8 H -0.26 -10.40 7.11 99.48 0.71 -9.70 15 9 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 11 C 0.45 22.43 7.32 86.83 0.64 23.06 15 12 O -0.63 -35.35 16.64 -3.91 -0.06 -35.42 15 13 C -0.04 -1.52 5.18 -19.89 -0.10 -1.62 15 14 C -0.14 -4.23 9.78 22.64 0.22 -4.01 15 15 C 0.15 3.58 11.17 84.62 0.95 4.53 15 16 N -0.52 -15.20 10.35 -197.12 -2.04 -17.24 15 17 C 0.30 9.41 8.41 84.73 0.71 10.13 15 18 F -0.11 -3.49 17.29 44.97 0.78 -2.72 15 19 C -0.18 -6.05 7.55 22.70 0.17 -5.88 15 20 H 0.06 2.61 6.85 -2.39 -0.02 2.59 15 21 H 0.06 2.72 6.97 -2.39 -0.02 2.71 15 22 H 0.06 2.42 5.36 -2.39 -0.01 2.40 15 23 H 0.28 13.17 8.31 -92.71 -0.77 12.40 15 24 H 0.16 4.39 8.06 -2.91 -0.02 4.36 15 25 H 0.22 2.97 8.06 -2.91 -0.02 2.95 15 26 H 0.15 5.31 5.90 -2.91 -0.02 5.29 15 Total: -1.00 -64.47 236.70 4.87 -59.60 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.22 Total: 7.90 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 4.71 Total: 13.96 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.80 Total: -85.58 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.06 Total: -35.42 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -64.47 4.87 -59.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227422214.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.326 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds