Wall clock time and date at job start Sun Mar 29 2020 21:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86799 * 119.99512 * 2 1 4 4 H 1.48496 * 109.47198 * 269.99976 * 3 2 1 5 5 H 1.48502 * 109.47235 * 30.00044 * 3 2 1 6 6 H 1.48504 * 109.46893 * 149.99654 * 3 2 1 7 7 C 1.38773 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00419 * 0.02562 * 7 2 1 9 9 O 1.34880 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.34810 * 117.00212 * 179.97438 * 9 7 2 11 11 O 1.21573 * 119.99582 * 0.02562 * 10 9 7 12 12 C 1.47100 * 119.99723 * 180.02562 * 10 9 7 13 13 C 1.39931 * 120.14722 * 0.02562 * 12 10 9 14 14 C 1.36523 * 120.07648 * 179.97438 * 13 12 10 15 15 C 1.39190 * 120.38537 * 359.97438 * 14 13 12 16 16 O 1.35706 * 119.85533 * 180.02562 * 15 14 13 17 17 C 1.38721 * 120.28927 * 0.04888 * 15 14 13 18 18 C 1.38466 * 119.91265 * 359.94944 * 17 15 14 19 19 O 1.35645 * 120.18411 * 180.29567 * 18 17 15 20 20 H 0.96995 * 120.00491 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.95742 * 0.02562 * 13 12 10 22 22 H 1.08002 * 119.80622 * 179.97438 * 14 13 12 23 23 H 0.96697 * 114.00076 * 90.00623 * 16 15 14 24 24 H 1.08004 * 120.04490 * 179.97438 * 17 15 14 25 25 H 0.96697 * 114.00681 * 269.72219 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5458 1.4403 0.7001 7 6 2.0083 -1.2018 0.0005 8 1 1.4684 -2.1372 0.0005 9 8 3.3571 -1.2018 0.0011 10 6 3.9692 -2.4029 0.0021 11 8 3.3070 -3.4225 0.0021 12 6 5.4382 -2.4797 0.0033 13 6 6.2032 -1.3081 0.0039 14 6 7.5665 -1.3811 0.0055 15 6 8.2053 -2.6177 0.0071 16 8 9.5610 -2.6777 0.0093 17 6 7.4622 -3.7891 0.0061 18 6 6.0788 -3.7292 0.0045 19 8 5.3468 -4.8712 0.0095 20 1 -0.4850 0.8400 -0.0004 21 1 5.7146 -0.3449 0.0039 22 1 8.1527 -0.4740 0.0056 23 1 9.9526 -2.6948 0.8933 24 1 7.9620 -4.7465 0.0069 25 1 5.1317 -5.2045 -0.8724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232580176.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:57 Heat of formation + Delta-G solvation = -160.961192 kcal Electronic energy + Delta-G solvation = -14766.971695 eV Core-core repulsion = 11903.660793 eV Total energy + Delta-G solvation = -2863.310902 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.64842 -40.47223 -38.86986 -37.20391 -36.81875 -34.52779 -31.70724 -30.87112 -27.71449 -24.75108 -23.75358 -21.99555 -20.22747 -19.95626 -19.04946 -18.28566 -17.42093 -16.99735 -16.72641 -16.16459 -15.93958 -15.68466 -15.10162 -14.57224 -14.29607 -13.92405 -13.58312 -13.37945 -12.84614 -12.41814 -12.29793 -11.98937 -11.82697 -11.66084 -11.08221 -10.85683 -10.02907 -9.73862 -8.57658 -6.42754 -0.45039 0.16976 1.32478 1.34699 1.53283 1.64941 2.24344 2.33156 2.52335 2.89627 2.94219 3.40862 3.75998 4.03561 4.15378 4.37120 4.54069 4.85036 5.07224 5.20887 5.23788 5.45409 5.56057 5.86546 6.48377 6.69810 6.77881 6.80924 7.54107 8.55272 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.008278 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.901213 B = 3381.550540 C = 4100.542204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.245 1.245 7 C -0.407 4.407 8 H 0.056 0.944 9 O -0.250 6.250 10 C 0.448 3.552 11 O -0.559 6.559 12 C -0.173 4.173 13 C -0.043 4.043 14 C -0.156 4.156 15 C 0.168 3.832 16 O -0.495 6.495 17 C -0.181 4.181 18 C 0.173 3.827 19 O -0.495 6.495 20 H 0.291 0.709 21 H 0.141 0.859 22 H 0.169 0.831 23 H 0.421 0.579 24 H 0.165 0.835 25 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.498 -0.463 0.083 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.169 1.169 7 C -0.483 4.483 8 H 0.074 0.926 9 O -0.160 6.160 10 C 0.297 3.703 11 O -0.455 6.455 12 C -0.175 4.175 13 C -0.061 4.061 14 C -0.174 4.174 15 C 0.122 3.878 16 O -0.311 6.311 17 C -0.199 4.199 18 C 0.127 3.873 19 O -0.308 6.308 20 H 0.101 0.899 21 H 0.159 0.841 22 H 0.187 0.813 23 H 0.283 0.717 24 H 0.183 0.817 25 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 20.093 -0.569 0.094 20.101 hybrid contribution -0.841 0.001 -0.008 0.841 sum 19.251 -0.568 0.085 19.260 Atomic orbital electron populations 1.69699 1.07676 1.30403 1.47679 1.25624 0.96011 1.02828 0.94003 0.85090 0.79250 0.75419 0.80060 1.18094 1.18875 1.16851 1.20349 0.77637 0.95898 1.54411 0.92630 1.83550 1.22019 1.31996 1.78404 1.21399 0.89759 0.81814 0.77377 1.90676 1.67810 1.36702 1.50322 1.19807 0.88472 0.96234 1.12971 1.21114 0.94279 0.97266 0.93487 1.21379 0.93389 0.99305 1.03309 1.18424 0.83812 0.91068 0.94483 1.84687 1.14233 1.96081 1.36051 1.21722 0.91104 1.00970 1.06134 1.18446 0.89784 0.84092 0.94936 1.84677 1.73152 1.37955 1.35006 0.89926 0.84081 0.81314 0.71705 0.81743 0.73086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.88 13.96 21.63 0.30 -55.58 15 2 C 0.02 0.90 5.49 84.88 0.47 1.37 15 3 Si 0.98 43.24 28.62 68.60 1.96 45.20 15 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 6 H -0.25 -10.13 7.11 99.48 0.71 -9.42 15 7 C -0.41 -25.72 10.11 67.95 0.69 -25.03 15 8 H 0.06 4.00 7.09 -2.91 -0.02 3.98 15 9 O -0.25 -13.82 7.81 10.29 0.08 -13.74 15 10 C 0.45 23.01 7.82 70.15 0.55 23.56 15 11 O -0.56 -32.30 14.40 26.61 0.38 -31.92 15 12 C -0.17 -6.62 5.89 -20.01 -0.12 -6.74 15 13 C -0.04 -1.31 9.56 22.28 0.21 -1.09 15 14 C -0.16 -3.38 9.91 22.10 0.22 -3.16 15 15 C 0.17 3.37 6.70 22.61 0.15 3.53 15 16 O -0.50 -7.05 13.48 -90.26 -1.22 -8.27 15 17 C -0.18 -4.21 9.92 22.44 0.22 -3.99 15 18 C 0.17 5.62 6.72 22.85 0.15 5.78 15 19 O -0.49 -16.94 11.57 -68.65 -0.79 -17.73 15 20 H 0.29 15.91 8.31 -92.71 -0.77 15.14 15 21 H 0.14 4.33 7.60 -2.91 -0.02 4.31 15 22 H 0.17 2.54 8.06 -2.91 -0.02 2.52 15 23 H 0.42 1.57 9.06 -74.06 -0.67 0.90 15 24 H 0.17 2.98 8.06 -2.91 -0.02 2.96 15 25 H 0.41 10.86 9.06 -74.06 -0.67 10.19 15 Total: -1.00 -80.44 240.52 3.18 -77.26 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -0.08 Total: 10.56 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 2.54 Total: -5.79 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.30 Total: -55.58 kcal Atomic # 8 Polarization: -70.11 SS G_CDS: -1.55 Total: -71.66 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.96 Total: 45.20 kcal Total: -80.44 3.18 -77.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232580176.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.698 kcal (2) G-P(sol) polarization free energy of solvation -80.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds