Wall clock time and date at job start Sun Mar 29 2020 21:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00391 * 2 1 4 4 H 1.48496 * 109.47334 * 270.00623 * 3 2 1 5 5 H 1.48506 * 109.46777 * 30.00007 * 3 2 1 6 6 H 1.48498 * 109.47161 * 149.99956 * 3 2 1 7 7 C 1.37883 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99864 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47053 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99844 * 180.02562 * 10 9 7 12 12 O 1.21571 * 120.00493 * 359.97438 * 11 10 9 13 13 C 1.47684 * 119.99838 * 180.02562 * 11 10 9 14 14 C 1.40008 * 120.57511 * 0.29445 * 13 11 10 15 15 C 1.38346 * 118.31408 * 180.24658 * 14 13 11 16 16 C 1.38345 * 119.37860 * 359.45892 * 15 14 13 17 17 N 1.31912 * 121.13137 * 0.28076 * 16 15 14 18 18 C 1.31945 * 121.84221 * 0.02562 * 17 16 15 19 19 F 1.35105 * 119.75637 * 179.97438 * 18 17 16 20 20 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47108 * 60.00509 * 9 7 2 22 22 H 1.08995 * 109.47813 * 300.00319 * 9 7 2 23 23 H 0.96999 * 119.99656 * 359.97438 * 10 9 7 24 24 H 1.08000 * 120.84454 * 0.02562 * 14 13 11 25 25 H 1.08002 * 120.31278 * 179.74208 * 15 14 13 26 26 H 1.08004 * 119.43551 * 180.25810 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 -0.0011 12 8 0.5585 -5.1055 -0.0011 13 6 2.7134 -6.0059 -0.0005 14 6 4.0923 -5.7639 0.0068 15 6 4.9492 -6.8501 0.0018 16 6 4.4230 -8.1296 0.0012 17 7 3.1194 -8.3309 -0.0001 18 6 2.2603 -7.3294 -0.0015 19 9 0.9335 -7.5840 -0.0034 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 3.1566 -3.4354 -0.0009 24 1 4.4775 -4.7549 0.0125 25 1 6.0188 -6.7006 0.0029 26 1 5.0911 -8.9782 0.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236177242.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:25 Heat of formation + Delta-G solvation = -70.782435 kcal Electronic energy + Delta-G solvation = -14450.101750 eV Core-core repulsion = 11635.366833 eV Total energy + Delta-G solvation = -2814.734917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.10996 -41.45307 -40.01938 -36.29034 -34.67674 -33.68835 -32.12184 -29.37904 -26.08430 -24.89208 -24.03346 -21.84543 -19.73365 -18.95195 -18.36333 -17.86220 -17.32564 -16.88743 -16.28063 -16.09066 -15.97227 -15.19003 -14.66325 -14.30263 -14.29372 -13.92594 -13.90886 -13.61906 -12.93983 -12.71763 -12.22866 -11.51333 -11.32680 -11.19769 -10.82682 -10.71323 -10.19380 -9.88680 -8.29764 -6.47290 -0.56862 -0.03103 1.44615 1.47315 1.58422 1.76455 2.12965 2.39637 2.51433 2.61085 3.05710 3.37025 3.62850 3.75989 3.94383 4.37676 4.66907 4.78736 4.96595 5.06757 5.18762 5.38270 5.48108 5.61415 5.80166 6.48071 6.60813 6.73177 7.17828 7.32544 8.82625 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.048439 B = 0.006160 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.908724 B = 4544.509012 C = 5107.272919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.251 1.251 7 C -0.556 4.556 8 H 0.090 0.910 9 C 0.265 3.735 10 N -0.691 5.691 11 C 0.538 3.462 12 O -0.590 6.590 13 C -0.222 4.222 14 C -0.013 4.013 15 C -0.161 4.161 16 C 0.158 3.842 17 N -0.539 5.539 18 C 0.327 3.673 19 F -0.117 7.117 20 H 0.269 0.731 21 H -0.010 1.010 22 H -0.010 1.010 23 H 0.411 0.589 24 H 0.176 0.824 25 H 0.205 0.795 26 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.866 -11.292 0.029 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.175 1.175 7 C -0.594 4.594 8 H 0.108 0.892 9 C 0.142 3.858 10 N -0.341 5.341 11 C 0.325 3.675 12 O -0.472 6.472 13 C -0.229 4.229 14 C -0.039 4.039 15 C -0.180 4.180 16 C 0.002 3.998 17 N -0.255 5.255 18 C 0.174 3.826 19 F -0.096 7.096 20 H 0.078 0.922 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.248 0.752 24 H 0.193 0.807 25 H 0.222 0.778 26 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 15.475 -12.139 0.034 19.668 hybrid contribution -0.364 1.637 -0.015 1.677 sum 15.111 -10.502 0.019 18.402 Atomic orbital electron populations 1.70145 1.08428 1.28666 1.49789 1.26109 0.95765 1.04061 0.93760 0.85109 0.78551 0.76668 0.78597 1.19611 1.21235 1.17476 1.21597 0.94509 0.90106 1.53146 0.89180 1.18657 0.88666 0.83997 0.94466 1.46012 1.11539 1.04708 1.71841 1.18543 0.87910 0.83921 0.77100 1.90780 1.18452 1.85450 1.52542 1.20782 0.96936 0.91962 1.13205 1.22208 0.88793 1.03322 0.89562 1.22715 1.03958 0.91243 1.00099 1.23740 0.88032 0.99670 0.88383 1.67214 1.06288 1.34425 1.17545 1.18436 0.79215 0.89044 0.95883 1.91640 1.30391 1.94976 1.92604 0.92223 0.99168 0.99155 0.75183 0.80680 0.77824 0.76405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.68 15 2 C 0.00 0.15 5.46 84.66 0.46 0.61 15 3 Si 0.99 41.22 29.54 68.60 2.03 43.25 15 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 5 H -0.29 -11.99 7.11 99.48 0.71 -11.29 15 6 H -0.25 -9.56 7.11 99.48 0.71 -8.86 15 7 C -0.56 -29.49 9.28 25.60 0.24 -29.25 15 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 15 9 C 0.26 14.52 5.43 85.63 0.46 14.98 15 10 N -0.69 -29.28 5.50 -469.87 -2.59 -31.87 15 11 C 0.54 23.40 7.78 86.74 0.67 24.07 15 12 O -0.59 -31.93 15.37 -3.94 -0.06 -31.99 15 13 C -0.22 -7.13 5.90 -19.95 -0.12 -7.25 15 14 C -0.01 -0.25 9.64 22.72 0.22 -0.03 15 15 C -0.16 -1.82 10.09 22.32 0.23 -1.60 15 16 C 0.16 2.30 11.17 84.71 0.95 3.25 15 17 N -0.54 -14.32 10.36 -195.73 -2.03 -16.34 15 18 C 0.33 11.13 8.41 85.08 0.72 11.85 15 19 F -0.12 -4.84 15.59 44.97 0.70 -4.14 15 20 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 21 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 23 H 0.41 13.44 6.43 -92.71 -0.60 12.84 15 24 H 0.18 2.45 6.52 -2.91 -0.02 2.43 15 25 H 0.20 0.21 8.06 -2.91 -0.02 0.18 15 26 H 0.22 0.97 8.06 -2.91 -0.02 0.94 15 Total: -1.00 -79.63 245.37 2.79 -76.84 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 0.63 Total: 3.29 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 3.83 Total: 16.63 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.33 Total: -103.89 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.06 Total: -31.99 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.70 Total: -4.14 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -79.63 2.79 -76.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236177242.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.056 kcal (2) G-P(sol) polarization free energy of solvation -79.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds