Wall clock time and date at job start Sun Mar 29 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35240 * 126.39584 * 2 1 4 4 N 1.33450 * 107.83611 * 179.74381 * 3 2 1 5 5 C 1.31283 * 108.70856 * 0.42903 * 4 3 2 6 6 C 1.47456 * 125.70745 * 179.83704 * 5 4 3 7 7 O 1.21601 * 119.99986 * 179.68778 * 6 5 4 8 8 N 1.34777 * 119.99987 * 359.69084 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47300 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00355 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99771 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47174 * 89.99890 * 15 13 11 17 17 H 1.48501 * 109.47062 * 209.99841 * 15 13 11 18 18 H 1.48504 * 109.46913 * 329.99640 * 15 13 11 19 19 O 1.34313 * 126.38937 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47191 * 300.02617 * 1 2 3 22 22 H 1.09001 * 109.47232 * 60.01971 * 1 2 3 23 23 H 1.07995 * 126.07849 * 359.97438 * 3 2 1 24 24 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 25 25 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 26 26 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 27 27 H 1.09004 * 109.46930 * 299.99770 * 10 9 8 28 28 H 1.09004 * 109.47059 * 59.99372 * 10 9 8 29 29 H 0.96991 * 119.99886 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3095 1.0886 0.0000 4 7 3.5746 0.6638 0.0057 5 6 3.5780 -0.6490 -0.0001 6 6 4.7776 -1.5064 -0.0002 7 8 4.6598 -2.7167 -0.0002 8 7 6.0046 -0.9488 -0.0001 9 6 7.1964 -1.8007 -0.0008 10 6 8.4502 -0.9238 -0.0012 11 6 9.6762 -1.8001 -0.0012 12 1 9.5716 -2.8750 -0.0005 13 6 10.9314 -1.2296 -0.0022 14 7 12.0013 -1.9944 -0.0016 15 14 11.1123 0.6296 -0.0027 16 1 11.1611 1.1226 1.3972 17 1 12.3666 1.0047 -0.7036 18 1 9.9530 1.2395 -0.7022 19 8 2.3038 -1.0812 -0.0005 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5142 0.8897 22 1 -0.3634 0.5135 -0.8902 23 1 1.9843 2.1184 -0.0004 24 1 6.0985 0.0167 -0.0005 25 1 7.1934 -2.4304 0.8890 26 1 7.1930 -2.4297 -0.8910 27 1 8.4530 -0.2944 -0.8912 28 1 8.4537 -0.2945 0.8888 29 1 12.8843 -1.5930 -0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259555607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:46 Heat of formation + Delta-G solvation = -19.154075 kcal Electronic energy + Delta-G solvation = -14449.163917 eV Core-core repulsion = 11760.128078 eV Total energy + Delta-G solvation = -2689.035838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.60859 -39.28576 -35.45258 -34.85607 -32.97550 -32.66571 -30.37295 -27.84242 -25.09621 -23.51445 -22.10674 -20.88457 -20.63216 -18.12968 -17.13333 -16.97294 -16.33418 -15.33747 -15.03020 -14.55284 -14.18050 -13.91793 -13.60277 -13.54849 -13.20907 -12.76010 -12.61289 -11.67275 -11.53090 -11.24851 -10.90689 -10.53273 -10.43715 -10.05634 -9.89332 -9.35487 -9.08307 -8.72577 -8.60314 -6.11702 -4.12454 0.76181 2.03301 2.09194 3.21170 3.26901 3.34797 3.36517 3.41751 4.15693 4.38120 4.42048 4.67341 4.88551 4.99278 5.15219 5.21290 5.52197 5.71544 5.89202 6.01281 6.11354 6.47115 6.49942 7.04151 7.18841 7.25444 7.62462 7.70468 8.19822 8.42426 8.91813 9.48037 11.01018 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.058135 B = 0.005054 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.524401 B = 5538.671061 C = 5994.445527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.032 4.032 3 C -0.042 4.042 4 N -0.438 5.438 5 C 0.148 3.852 6 C 0.605 3.395 7 O -0.521 6.521 8 N -0.691 5.691 9 C 0.130 3.870 10 C -0.023 4.023 11 C -0.524 4.524 12 H 0.077 0.923 13 C 0.070 3.930 14 N -0.897 5.897 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 O -0.166 6.166 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.191 0.809 24 H 0.410 0.590 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.392 8.027 -0.031 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.185 4.185 4 N -0.171 5.171 5 C -0.058 4.058 6 C 0.386 3.614 7 O -0.396 6.396 8 N -0.342 5.342 9 C 0.009 3.991 10 C -0.061 4.061 11 C -0.562 4.562 12 H 0.095 0.905 13 C -0.132 4.132 14 N -0.535 5.535 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 O -0.049 6.049 20 H 0.100 0.900 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.208 0.792 24 H 0.245 0.755 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.664 7.371 -0.027 21.940 hybrid contribution -0.380 1.176 0.018 1.236 sum -21.045 8.547 -0.008 22.714 Atomic orbital electron populations 1.20360 0.83361 1.04817 1.04198 1.24044 0.95493 0.84642 1.04547 1.23193 0.87387 1.00628 1.07277 1.70386 1.23760 1.08505 1.14496 1.25723 0.84599 0.89460 1.06029 1.16049 0.80773 0.85633 0.78963 1.90878 1.85715 1.12875 1.50093 1.46045 1.04511 1.12027 1.71636 1.21754 0.81552 0.93417 1.02382 1.19826 0.92644 0.96306 0.97295 1.20871 0.88522 0.94867 1.51965 0.90487 1.24988 0.95745 0.98207 0.94284 1.69897 0.98018 1.35374 1.50225 0.86761 0.77834 0.85984 0.78592 1.20171 1.21252 1.18933 1.84474 1.16930 1.35860 1.67654 0.89996 0.88866 0.88859 0.79163 0.75491 0.91110 0.91094 0.95648 0.96088 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.44 36.01 0.38 0.00 15 2 C -0.03 -0.33 7.40 -35.38 -0.26 -0.59 15 3 C -0.04 -0.45 11.80 -17.92 -0.21 -0.67 15 4 N -0.44 -6.30 10.91 -11.80 -0.13 -6.43 15 5 C 0.15 2.36 8.09 -14.03 -0.11 2.24 15 6 C 0.61 10.95 7.82 -12.51 -0.10 10.85 15 7 O -0.52 -10.96 17.11 -0.19 0.00 -10.96 15 8 N -0.69 -12.12 5.55 -61.37 -0.34 -12.47 15 9 C 0.13 2.62 5.61 -4.04 -0.02 2.60 15 10 C -0.02 -0.52 4.16 -27.88 -0.12 -0.64 15 11 C -0.52 -14.52 9.66 -34.44 -0.33 -14.86 15 12 H 0.08 2.30 7.99 -52.49 -0.42 1.88 15 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 14 N -0.90 -27.15 13.96 55.43 0.77 -26.38 15 15 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 15 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 18 H -0.26 -6.00 6.54 56.52 0.37 -5.63 15 19 O -0.17 -2.44 10.79 -0.45 0.00 -2.44 15 20 H 0.08 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 15 22 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 15 23 H 0.19 1.32 8.06 -52.49 -0.42 0.90 15 24 H 0.41 6.48 8.15 -40.82 -0.33 6.15 15 25 H 0.07 1.47 8.14 -51.93 -0.42 1.04 15 26 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 27 H 0.03 0.57 7.20 -51.93 -0.37 0.19 15 28 H 0.02 0.46 7.57 -51.93 -0.39 0.07 15 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -32.89 264.96 -4.48 -37.37 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.22 Total: 0.11 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.88 Total: 0.84 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.30 Total: -45.28 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.01 Total: -13.41 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.89 -4.48 -37.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259555607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.220 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds