Wall clock time and date at job start Sun Mar 29 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 128.03788 * 2 1 4 4 O 1.34022 * 106.66985 * 179.97438 * 3 2 1 5 5 N 1.20905 * 111.84070 * 359.97438 * 4 3 2 6 6 C 1.30984 * 111.44289 * 0.02562 * 5 4 3 7 7 C 1.48333 * 126.93387 * 180.02562 * 6 5 4 8 8 O 1.21493 * 119.99696 * 179.97438 * 7 6 5 9 9 N 1.34772 * 120.00255 * 359.97438 * 7 6 5 10 10 C 1.46507 * 119.99905 * 179.97438 * 9 7 6 11 11 H 1.08991 * 109.46945 * 325.00037 * 10 9 7 12 12 C 1.53002 * 109.46718 * 85.00189 * 10 9 7 13 13 C 1.50700 * 109.46789 * 204.99674 * 10 9 7 14 14 H 1.07997 * 120.00177 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99406 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00590 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99788 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47197 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47241 * 119.99990 * 17 15 13 20 20 H 1.48505 * 109.46996 * 240.00012 * 17 15 13 21 21 H 1.09009 * 109.46916 * 270.04111 * 1 2 3 22 22 H 1.08996 * 109.47465 * 30.04280 * 1 2 3 23 23 H 1.08998 * 109.46863 * 150.04660 * 1 2 3 24 24 H 1.08004 * 126.66466 * 0.02562 * 3 2 1 25 25 H 0.97000 * 119.99932 * 0.02562 * 9 7 6 26 26 H 1.08999 * 109.47233 * 60.00163 * 12 10 9 27 27 H 1.08997 * 109.46627 * 179.97438 * 12 10 9 28 28 H 1.09006 * 109.46873 * 299.99513 * 12 10 9 29 29 H 0.96994 * 120.00431 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5774 0.0006 5 7 3.5989 -0.6316 0.0014 6 6 2.3837 -1.1205 0.0010 7 6 1.9993 -2.5532 0.0022 8 8 0.8257 -2.8672 0.0021 9 7 2.9519 -3.5065 0.0035 10 6 2.5722 -4.9215 0.0054 11 1 1.6650 -5.0534 0.5949 12 6 2.3187 -5.3833 -1.4311 13 6 3.6858 -5.7396 0.6069 14 1 4.5860 -5.2541 0.9536 15 6 3.5551 -7.1079 0.7146 16 7 2.4586 -7.6991 0.2929 17 14 4.9351 -8.1220 1.4609 18 1 6.0513 -7.2251 1.8547 19 1 4.4300 -8.8396 2.6587 20 1 5.4213 -9.1073 0.4619 21 1 -0.3633 0.0007 1.0278 22 1 -0.3634 0.8895 -0.5145 23 1 -0.3633 -0.8904 -0.5131 24 1 2.0559 2.1075 0.0004 25 1 3.8890 -3.2558 0.0040 26 1 3.2260 -5.2513 -2.0206 27 1 2.0367 -6.4361 -1.4298 28 1 1.5133 -4.7915 -1.8662 29 1 2.3669 -8.6617 0.3684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259636770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:19 Heat of formation + Delta-G solvation = -6.542013 kcal Electronic energy + Delta-G solvation = -15074.646337 eV Core-core repulsion = 12386.157399 eV Total energy + Delta-G solvation = -2688.488938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.12904 -40.62275 -36.94051 -35.62203 -34.55357 -33.31329 -30.93887 -29.07243 -27.42456 -25.88332 -22.93916 -22.61770 -21.33171 -19.74858 -18.83330 -18.26311 -17.42319 -17.20004 -16.17184 -15.88886 -15.36460 -14.71996 -14.51921 -14.19011 -14.11994 -13.78558 -13.31332 -13.07236 -12.95930 -12.81070 -12.36854 -12.33382 -12.17883 -11.32074 -11.21072 -11.15169 -10.67219 -10.37276 -9.94702 -8.23813 -6.41884 0.14476 0.76816 1.41554 1.42085 1.54902 2.06159 2.13548 2.34645 2.44506 2.99750 3.06526 3.66474 3.96586 4.12919 4.47217 4.66321 4.79351 4.82772 4.85638 4.95979 4.98412 5.28458 5.38445 5.47592 5.57460 5.77254 5.99762 6.61140 6.67661 7.08919 7.16598 7.32694 8.83029 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.046274 B = 0.006602 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.944394 B = 4240.439930 C = 4631.474924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.175 4.175 3 C -0.033 4.033 4 O 0.137 5.863 5 N -0.353 5.353 6 C -0.058 4.058 7 C 0.578 3.422 8 O -0.568 6.568 9 N -0.692 5.692 10 C 0.269 3.731 11 H 0.008 0.992 12 C -0.133 4.133 13 C -0.553 4.553 14 H 0.068 0.932 15 C 0.018 3.982 16 N -0.914 5.914 17 Si 0.976 3.024 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.275 1.275 21 H 0.077 0.923 22 H 0.110 0.890 23 H 0.053 0.947 24 H 0.284 0.716 25 H 0.403 0.597 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.015 0.985 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 17.477 -0.848 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.181 4.181 3 C -0.114 4.114 4 O 0.058 5.942 5 N -0.051 5.051 6 C -0.216 4.216 7 C 0.362 3.638 8 O -0.447 6.447 9 N -0.340 5.340 10 C 0.166 3.834 11 H 0.026 0.974 12 C -0.192 4.192 13 C -0.591 4.591 14 H 0.086 0.914 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.200 1.200 21 H 0.096 0.904 22 H 0.128 0.872 23 H 0.072 0.928 24 H 0.299 0.701 25 H 0.238 0.762 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.772 16.369 -0.866 16.410 hybrid contribution 0.015 -0.779 0.306 0.837 sum 0.788 15.590 -0.560 15.620 Atomic orbital electron populations 1.20213 0.85791 1.03992 1.03412 1.21726 1.00085 0.89922 1.06333 1.26721 0.80270 1.02554 1.01835 1.84730 1.30868 1.14115 1.64464 1.74179 1.21539 0.92779 1.16587 1.23545 0.90953 0.96682 1.10373 1.17455 0.85624 0.83658 0.77046 1.90691 1.18766 1.82573 1.52670 1.46309 1.09273 1.07448 1.70975 1.18525 0.95570 0.75374 0.93886 0.97402 1.21906 0.97970 1.02400 0.96948 1.21502 1.02816 0.92739 1.42020 0.91423 1.25785 0.98521 0.98661 0.95273 1.70032 1.27791 1.10808 1.46532 0.85246 0.78601 0.78222 0.77965 1.18822 1.20510 1.20022 0.90395 0.87151 0.92817 0.70086 0.76243 0.94315 0.90748 0.96573 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 10.01 71.24 0.71 -1.02 15 2 C -0.18 -4.52 6.34 -19.54 -0.12 -4.64 15 3 C -0.03 -0.54 12.24 67.14 0.82 0.28 15 4 O 0.14 3.17 11.18 71.82 0.80 3.97 15 5 N -0.35 -11.29 11.84 -49.51 -0.59 -11.87 15 6 C -0.06 -2.07 7.19 42.96 0.31 -1.77 15 7 C 0.58 26.11 7.81 86.93 0.68 26.78 15 8 O -0.57 -28.76 15.00 -3.69 -0.06 -28.82 15 9 N -0.69 -32.62 5.07 -448.51 -2.27 -34.89 15 10 C 0.27 14.71 2.56 44.24 0.11 14.83 15 11 H 0.01 0.51 7.58 -2.39 -0.02 0.49 15 12 C -0.13 -7.03 9.26 71.98 0.67 -6.36 15 13 C -0.55 -30.69 8.73 25.60 0.22 -30.46 15 14 H 0.07 3.60 7.74 -2.91 -0.02 3.58 15 15 C 0.02 1.00 5.30 84.65 0.45 1.45 15 16 N -0.91 -52.85 11.32 21.45 0.24 -52.61 15 17 Si 0.98 42.99 29.54 68.60 2.03 45.02 15 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 20 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 21 H 0.08 1.67 8.14 -2.38 -0.02 1.65 15 22 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.05 1.60 6.89 -2.39 -0.02 1.59 15 24 H 0.28 0.66 8.06 -2.91 -0.02 0.63 15 25 H 0.40 17.47 8.30 -92.71 -0.77 16.70 15 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 15 27 H 0.07 4.20 6.07 -2.39 -0.01 4.18 15 28 H 0.02 0.79 8.14 -2.38 -0.02 0.77 15 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 15 Total: -1.00 -70.80 260.22 4.42 -66.38 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.41 Total: 13.73 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 3.85 Total: -0.92 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -2.62 Total: -99.37 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.75 Total: -24.85 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -70.80 4.42 -66.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259636770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.842 kcal (2) G-P(sol) polarization free energy of solvation -70.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds