Wall clock time and date at job start Sun Mar 29 2020 22:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30012 * 127.32855 * 2 1 4 4 O 1.20663 * 112.30005 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.15492 * 0.02562 * 4 3 2 6 6 C 1.37363 * 106.34260 * 359.74060 * 5 4 3 7 7 C 1.47393 * 128.56777 * 180.26409 * 6 5 4 8 8 O 1.21614 * 120.00139 * 180.13052 * 7 6 5 9 9 N 1.34777 * 120.00248 * 0.13085 * 7 6 5 10 10 C 1.46493 * 120.00214 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47426 * 34.99480 * 10 9 7 12 12 C 1.52999 * 109.46858 * 274.99566 * 10 9 7 13 13 C 1.50700 * 109.47062 * 154.99966 * 10 9 7 14 14 H 1.07998 * 120.00199 * 34.99895 * 13 10 9 15 15 C 1.37882 * 119.99673 * 214.99715 * 13 10 9 16 16 N 1.31516 * 119.99625 * 184.91226 * 15 13 10 17 17 Si 1.86794 * 120.00013 * 4.91859 * 15 13 10 18 18 H 1.48500 * 109.47173 * 84.83192 * 17 15 13 19 19 H 1.48507 * 109.46933 * 204.82656 * 17 15 13 20 20 H 1.48497 * 109.47222 * 324.82916 * 17 15 13 21 21 H 1.09006 * 109.46425 * 90.03173 * 1 2 3 22 22 H 1.09002 * 109.46771 * 210.02299 * 1 2 3 23 23 H 1.08992 * 109.47540 * 330.02932 * 1 2 3 24 24 H 1.07992 * 126.83005 * 180.02562 * 5 4 3 25 25 H 0.97000 * 119.99486 * 359.97438 * 9 7 6 26 26 H 1.08999 * 109.47304 * 175.03835 * 12 10 9 27 27 H 1.09000 * 109.47464 * 295.03634 * 12 10 9 28 28 H 1.09000 * 109.47031 * 55.03882 * 12 10 9 29 29 H 0.97004 * 119.99710 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0004 6 6 2.3992 -1.1696 0.0057 7 6 2.0402 -2.5991 0.0131 8 8 0.8706 -2.9323 0.0147 9 7 3.0081 -3.5370 0.0181 10 6 2.6513 -4.9578 0.0249 11 1 1.7465 -5.1081 -0.5641 12 6 2.4046 -5.4147 1.4641 13 6 3.7781 -5.7616 -0.5711 14 1 4.8020 -5.4588 -0.4091 15 6 3.5017 -6.8836 -1.3233 16 7 4.4845 -7.6393 -1.7623 17 14 1.7316 -7.3302 -1.7189 18 1 1.2902 -6.5834 -2.9242 19 1 1.6352 -8.7893 -1.9779 20 1 0.8622 -6.9730 -0.5693 21 1 -0.3632 -0.0006 -1.0278 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5133 24 1 4.5967 -1.1193 0.0011 25 1 3.9410 -3.2712 0.0165 26 1 2.0540 -6.4468 1.4627 27 1 3.3332 -5.3473 2.0310 28 1 1.6509 -4.7756 1.9241 29 1 4.2900 -8.4289 -2.2912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259657432.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:27 Heat of formation + Delta-G solvation = 13.441481 kcal Electronic energy + Delta-G solvation = -15111.790922 eV Core-core repulsion = 12424.168533 eV Total energy + Delta-G solvation = -2687.622389 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.81108 -38.97253 -35.09710 -34.26354 -32.69471 -31.89570 -29.72817 -28.53366 -25.40767 -24.49372 -21.19512 -21.11026 -19.66688 -18.30479 -17.64153 -16.97955 -15.95261 -15.51409 -14.73456 -14.18166 -13.89430 -13.23232 -13.18114 -13.05973 -12.58758 -12.48429 -12.36299 -11.58107 -11.27732 -11.14411 -10.87929 -10.65945 -9.94470 -9.83990 -9.63181 -9.46913 -9.28159 -8.77290 -8.22665 -6.30011 -4.34664 1.22164 1.88273 3.05729 3.22282 3.30422 3.36982 3.66928 3.80160 4.16611 4.27011 4.41590 4.99483 5.06812 5.34677 5.43803 5.59294 5.70058 5.76696 6.21455 6.27842 6.45217 6.60253 6.85105 7.09949 7.27552 7.43658 8.02417 8.24734 8.44361 8.68742 8.80366 9.31321 10.81455 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.041154 B = 0.007306 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.215978 B = 3831.359750 C = 4124.085027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.064 3.936 3 N -0.367 5.367 4 O 0.091 5.909 5 C -0.014 4.014 6 C -0.242 4.242 7 C 0.578 3.422 8 O -0.547 6.547 9 N -0.694 5.694 10 C 0.232 3.768 11 H 0.052 0.948 12 C -0.148 4.148 13 C -0.533 4.533 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.887 5.887 17 Si 0.874 3.126 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.260 1.260 21 H 0.082 0.918 22 H 0.096 0.904 23 H 0.073 0.927 24 H 0.227 0.773 25 H 0.392 0.608 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 11.745 3.574 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 N -0.076 5.076 4 O 0.032 5.968 5 C -0.096 4.096 6 C -0.249 4.249 7 C 0.363 3.637 8 O -0.427 6.427 9 N -0.342 5.342 10 C 0.130 3.870 11 H 0.070 0.930 12 C -0.207 4.207 13 C -0.571 4.571 14 H 0.097 0.903 15 C -0.123 4.123 16 N -0.523 5.523 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.184 1.184 21 H 0.101 0.899 22 H 0.115 0.885 23 H 0.092 0.908 24 H 0.243 0.757 25 H 0.225 0.775 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.503 12.594 3.466 13.524 hybrid contribution -0.252 -1.123 -0.337 1.199 sum -3.755 11.471 3.129 12.469 Atomic orbital electron populations 1.20246 0.85085 1.04172 1.03791 1.24876 0.98930 0.86597 0.99419 1.73627 0.89378 1.23761 1.20790 1.84527 1.21494 1.23273 1.67516 1.26451 1.00603 0.83748 0.98761 1.22718 0.92569 0.96459 1.13184 1.17006 0.86252 0.82839 0.77612 1.90731 1.18426 1.81915 1.51600 1.46564 1.08174 1.07827 1.71633 1.19192 0.97679 0.76225 0.93932 0.92971 1.22223 0.99606 1.00273 0.98576 1.20978 0.93221 1.09878 1.32987 0.90250 1.24939 0.97375 0.95662 0.94277 1.69878 1.31792 1.15381 1.35209 0.86892 0.85337 0.77660 0.80038 1.19789 1.21109 1.18413 0.89942 0.88487 0.90788 0.75681 0.77482 0.92728 0.93322 0.95139 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.15 36.01 0.37 -0.62 15 2 C 0.06 0.97 7.58 -79.76 -0.60 0.37 15 3 N -0.37 -5.42 12.01 34.78 0.42 -5.00 15 4 O 0.09 1.18 11.06 18.64 0.21 1.39 15 5 C -0.01 -0.16 11.85 30.41 0.36 0.20 15 6 C -0.24 -3.76 6.47 -102.89 -0.67 -4.43 15 7 C 0.58 11.01 7.78 -12.53 -0.10 10.91 15 8 O -0.55 -12.10 15.35 5.26 0.08 -12.02 15 9 N -0.69 -13.30 5.06 -56.02 -0.28 -13.59 15 10 C 0.23 5.30 2.22 -69.09 -0.15 5.15 15 11 H 0.05 1.31 4.73 -51.93 -0.25 1.06 15 12 C -0.15 -3.12 9.47 37.16 0.35 -2.77 15 13 C -0.53 -13.77 9.05 -34.44 -0.31 -14.08 15 14 H 0.08 2.14 8.06 -52.49 -0.42 1.72 15 15 C 0.08 2.24 5.47 -17.82 -0.10 2.14 15 16 N -0.89 -25.43 13.96 55.43 0.77 -24.66 15 17 Si 0.87 21.00 26.99 -169.99 -4.59 16.42 15 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 20 H -0.26 -6.13 6.82 56.52 0.39 -5.75 15 21 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 22 H 0.10 1.37 7.10 -51.93 -0.37 1.00 15 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.23 1.70 7.68 -52.49 -0.40 1.29 15 25 H 0.39 6.31 7.78 -40.82 -0.32 6.00 15 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 LS Contribution 259.86 15.07 3.92 3.92 Total: -1.00 -31.17 259.86 -3.35 -34.52 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.02 Total: 2.15 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.85 Total: -3.13 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.91 Total: -43.25 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.29 Total: -10.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.59 Total: 16.42 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.17 -3.35 -34.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657432.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.960 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds