Wall clock time and date at job start Sun Mar 29 2020 22:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 128.04335 * 2 1 4 4 O 1.34008 * 106.67209 * 180.23388 * 3 2 1 5 5 N 1.20911 * 111.84636 * 359.74855 * 4 3 2 6 6 C 1.30982 * 111.43603 * 359.97438 * 5 4 3 7 7 C 1.48332 * 126.93875 * 179.97438 * 6 5 4 8 8 O 1.21490 * 120.00430 * 185.91568 * 7 6 5 9 9 N 1.34781 * 119.99683 * 5.90590 * 7 6 5 10 10 C 1.46502 * 120.00008 * 5.09777 * 9 7 6 11 11 C 1.46505 * 119.99705 * 185.37257 * 9 7 6 12 12 C 1.50696 * 109.47159 * 269.72674 * 11 9 7 13 13 H 1.08005 * 119.99894 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00253 * 180.02562 * 12 11 9 15 15 N 1.31510 * 119.99566 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47650 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47255 * 119.99991 * 16 14 12 19 19 H 1.48501 * 109.47281 * 239.99580 * 16 14 12 20 20 H 1.08993 * 109.47566 * 270.16843 * 1 2 3 21 21 H 1.09004 * 109.46976 * 30.16821 * 1 2 3 22 22 H 1.08996 * 109.47239 * 150.15891 * 1 2 3 23 23 H 1.08005 * 126.66209 * 359.95147 * 3 2 1 24 24 H 1.08993 * 109.47293 * 275.63916 * 10 9 7 25 25 H 1.09000 * 109.47028 * 35.64136 * 10 9 7 26 26 H 1.09003 * 109.46608 * 155.64051 * 10 9 7 27 27 H 1.08997 * 109.47501 * 29.72908 * 11 9 7 28 28 H 1.09003 * 109.47004 * 149.72888 * 11 9 7 29 29 H 0.97003 * 119.99948 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5773 -0.0052 5 7 3.5989 -0.6317 -0.0034 6 6 2.3837 -1.1205 0.0038 7 6 1.9991 -2.5531 0.0075 8 8 0.8303 -2.8687 -0.0942 9 7 2.9464 -3.5048 0.1236 10 6 4.3417 -3.1248 0.3580 11 6 2.5816 -4.9191 0.0093 12 6 2.2363 -5.4606 1.3726 13 1 2.2834 -4.8155 2.2376 14 6 1.8603 -6.7794 1.5157 15 7 1.8025 -7.5646 0.4623 16 14 1.4316 -7.4502 3.2055 17 1 1.5739 -6.3722 4.2169 18 1 0.0311 -7.9439 3.2014 19 1 2.3494 -8.5681 3.5418 20 1 -0.3634 0.0030 1.0276 21 1 -0.3633 0.8885 -0.5165 22 1 -0.3633 -0.8914 -0.5113 23 1 2.0560 2.1075 -0.0007 24 1 4.8211 -2.8971 -0.5940 25 1 4.3756 -2.2455 1.0013 26 1 4.8664 -3.9490 0.8412 27 1 1.7201 -5.0200 -0.6506 28 1 3.4217 -5.4789 -0.4018 29 1 1.5376 -8.4923 0.5629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259740474.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:14 Heat of formation + Delta-G solvation = 32.869140 kcal Electronic energy + Delta-G solvation = -15272.081167 eV Core-core repulsion = 12585.301225 eV Total energy + Delta-G solvation = -2686.779942 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.90027 -38.87928 -35.06643 -34.41709 -32.79799 -31.92386 -28.20723 -27.78453 -26.01932 -24.32242 -22.25039 -21.45982 -19.33799 -17.63947 -17.20511 -16.52173 -16.15583 -15.28865 -14.43155 -14.16948 -14.03667 -13.25377 -13.17084 -12.74003 -12.44927 -12.40606 -12.12377 -11.74012 -11.23644 -11.04417 -10.84608 -10.60397 -10.18799 -10.00198 -9.62962 -9.36214 -9.25726 -8.45746 -7.71813 -6.06349 -4.11106 1.40044 1.88486 3.22732 3.29621 3.36799 3.41368 3.67632 3.79613 4.28662 4.43817 4.81129 4.96709 5.22827 5.28031 5.50629 5.73723 5.74713 5.87523 5.91513 6.06708 6.35772 6.40505 6.99310 7.35416 7.45982 7.89244 8.16042 8.18885 8.31319 8.80728 8.97221 9.53773 11.01925 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.041576 B = 0.007238 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.297993 B = 3867.362956 C = 4115.906309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.152 4.152 3 C -0.079 4.079 4 O 0.109 5.891 5 N -0.330 5.330 6 C -0.015 4.015 7 C 0.579 3.421 8 O -0.522 6.522 9 N -0.583 5.583 10 C 0.085 3.915 11 C 0.245 3.755 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.900 3.100 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.090 0.910 23 H 0.218 0.782 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 16.007 -0.973 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C -0.160 4.160 4 O 0.037 5.963 5 N -0.034 5.034 6 C -0.174 4.174 7 C 0.363 3.637 8 O -0.397 6.397 9 N -0.314 5.314 10 C -0.058 4.058 11 C 0.127 3.873 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.209 1.209 20 H 0.093 0.907 21 H 0.086 0.914 22 H 0.109 0.891 23 H 0.235 0.765 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.648 14.995 -1.092 15.266 hybrid contribution -0.902 -0.200 0.944 1.321 sum 1.746 14.795 -0.148 14.898 Atomic orbital electron populations 1.20216 0.86823 1.03788 1.03101 1.21398 0.99093 0.90339 1.04872 1.25665 0.82846 1.00990 1.06475 1.84766 1.29348 1.15926 1.66263 1.74373 1.21712 0.90931 1.16406 1.23920 0.88978 0.98149 1.06380 1.16920 0.85925 0.81797 0.79083 1.90738 1.17328 1.80996 1.50671 1.48103 1.07048 1.08748 1.67543 1.21798 0.82595 1.00934 1.00516 1.19417 0.97135 0.72762 0.98033 1.21440 1.46148 0.95458 0.93432 0.92326 1.24934 0.95231 0.96715 0.97193 1.69941 1.47965 1.06531 1.28920 0.86407 0.78143 0.78761 0.83912 1.19791 1.20802 1.20920 0.90732 0.91414 0.89088 0.76539 0.93389 0.91555 0.90629 0.93661 0.94473 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.06 36.01 0.36 -0.69 15 2 C -0.15 -2.21 6.34 -104.12 -0.66 -2.87 15 3 C -0.08 -0.85 12.24 29.69 0.36 -0.49 15 4 O 0.11 1.44 11.18 17.26 0.19 1.63 15 5 N -0.33 -5.43 8.96 33.29 0.30 -5.13 15 6 C -0.01 -0.27 6.80 -82.53 -0.56 -0.83 15 7 C 0.58 13.19 7.69 -12.10 -0.09 13.09 15 8 O -0.52 -13.34 14.94 5.37 0.08 -13.26 15 9 N -0.58 -13.50 2.86 -183.89 -0.53 -14.02 15 10 C 0.09 1.61 9.33 59.85 0.56 2.16 15 11 C 0.25 6.61 5.10 -5.19 -0.03 6.58 15 12 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 15 13 H 0.06 1.72 7.81 -52.48 -0.41 1.31 15 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 15 N -0.89 -26.74 13.29 55.43 0.74 -26.00 15 16 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 15 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.09 1.42 6.80 -51.93 -0.35 1.06 15 23 H 0.22 1.17 8.06 -52.48 -0.42 0.74 15 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.07 1.18 5.97 -51.93 -0.31 0.87 15 26 H 0.07 1.39 8.03 -51.93 -0.42 0.97 15 27 H 0.05 1.34 7.49 -51.93 -0.39 0.95 15 28 H 0.04 1.00 8.07 -51.93 -0.42 0.58 15 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -33.26 259.46 -3.93 -37.19 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -3.12 Total: -4.47 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.48 Total: 3.08 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.51 Total: -45.16 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.27 Total: -11.63 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.26 -3.93 -37.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740474.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.055 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds