Wall clock time and date at job start Sun Mar 29 2020 22:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 128.04335 * 2 1 4 4 O 1.34008 * 106.67209 * 180.23388 * 3 2 1 5 5 N 1.20911 * 111.84636 * 359.74855 * 4 3 2 6 6 C 1.30982 * 111.43603 * 359.97438 * 5 4 3 7 7 C 1.48332 * 126.93875 * 179.97438 * 6 5 4 8 8 O 1.21490 * 120.00430 * 185.91568 * 7 6 5 9 9 N 1.34781 * 119.99683 * 5.90590 * 7 6 5 10 10 C 1.46502 * 120.00008 * 5.09777 * 9 7 6 11 11 C 1.46505 * 119.99705 * 185.37257 * 9 7 6 12 12 C 1.50696 * 109.47159 * 269.72674 * 11 9 7 13 13 H 1.08005 * 119.99894 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00253 * 180.02562 * 12 11 9 15 15 N 1.31510 * 119.99566 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47650 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47255 * 119.99991 * 16 14 12 19 19 H 1.48501 * 109.47281 * 239.99580 * 16 14 12 20 20 H 1.08993 * 109.47566 * 270.16843 * 1 2 3 21 21 H 1.09004 * 109.46976 * 30.16821 * 1 2 3 22 22 H 1.08996 * 109.47239 * 150.15891 * 1 2 3 23 23 H 1.08005 * 126.66209 * 359.95147 * 3 2 1 24 24 H 1.08993 * 109.47293 * 275.63916 * 10 9 7 25 25 H 1.09000 * 109.47028 * 35.64136 * 10 9 7 26 26 H 1.09003 * 109.46608 * 155.64051 * 10 9 7 27 27 H 1.08997 * 109.47501 * 29.72908 * 11 9 7 28 28 H 1.09003 * 109.47004 * 149.72888 * 11 9 7 29 29 H 0.97003 * 119.99948 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5773 -0.0052 5 7 3.5989 -0.6317 -0.0034 6 6 2.3837 -1.1205 0.0038 7 6 1.9991 -2.5531 0.0075 8 8 0.8303 -2.8687 -0.0942 9 7 2.9464 -3.5048 0.1236 10 6 4.3417 -3.1248 0.3580 11 6 2.5816 -4.9191 0.0093 12 6 2.2363 -5.4606 1.3726 13 1 2.2834 -4.8155 2.2376 14 6 1.8603 -6.7794 1.5157 15 7 1.8025 -7.5646 0.4623 16 14 1.4316 -7.4502 3.2055 17 1 1.5739 -6.3722 4.2169 18 1 0.0311 -7.9439 3.2014 19 1 2.3494 -8.5681 3.5418 20 1 -0.3634 0.0030 1.0276 21 1 -0.3633 0.8885 -0.5165 22 1 -0.3633 -0.8914 -0.5113 23 1 2.0560 2.1075 -0.0007 24 1 4.8211 -2.8971 -0.5940 25 1 4.3756 -2.2455 1.0013 26 1 4.8664 -3.9490 0.8412 27 1 1.7201 -5.0200 -0.6506 28 1 3.4217 -5.4789 -0.4018 29 1 1.5376 -8.4923 0.5629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259740474.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:14 Heat of formation + Delta-G solvation = 9.611721 kcal Electronic energy + Delta-G solvation = -15273.089684 eV Core-core repulsion = 12585.301225 eV Total energy + Delta-G solvation = -2687.788460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.09996 -40.65776 -36.87699 -35.66527 -34.84060 -33.26922 -30.00857 -29.09358 -27.66373 -26.13690 -23.99167 -22.57920 -20.82839 -18.92578 -18.68383 -18.60913 -17.65285 -17.15258 -16.35894 -16.02014 -15.23554 -14.51125 -14.44229 -14.27535 -14.09179 -13.88036 -13.74234 -13.39912 -13.04750 -12.83636 -12.59477 -12.30292 -12.18325 -11.77860 -11.24306 -11.08894 -10.69596 -10.34909 -9.61952 -8.28065 -6.43321 0.17064 0.78201 1.34687 1.36768 1.49175 1.95571 2.13944 2.34622 2.40658 2.92807 3.02192 3.60001 3.88135 4.13238 4.29870 4.43983 4.55901 4.78582 4.81175 4.86642 4.89692 4.97891 5.09325 5.37300 5.45250 5.70452 5.96526 6.45980 6.63505 7.00337 7.17476 7.29281 8.79969 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.041576 B = 0.007238 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.297993 B = 3867.362956 C = 4115.906309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.177 4.177 3 C -0.031 4.031 4 O 0.134 5.866 5 N -0.342 5.342 6 C -0.055 4.055 7 C 0.571 3.429 8 O -0.565 6.565 9 N -0.596 5.596 10 C 0.090 3.910 11 C 0.260 3.740 12 C -0.546 4.546 13 H 0.049 0.951 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.972 3.028 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.267 1.267 20 H 0.075 0.925 21 H 0.111 0.889 22 H 0.051 0.949 23 H 0.283 0.717 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.005 0.995 28 H 0.030 0.970 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 18.573 0.068 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.183 4.183 3 C -0.111 4.111 4 O 0.056 5.944 5 N -0.041 5.041 6 C -0.212 4.212 7 C 0.357 3.643 8 O -0.444 6.444 9 N -0.326 5.326 10 C -0.052 4.052 11 C 0.140 3.860 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.796 3.204 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.192 1.192 20 H 0.094 0.906 21 H 0.129 0.871 22 H 0.070 0.930 23 H 0.298 0.702 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.023 0.977 28 H 0.048 0.952 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.234 17.537 -0.056 17.832 hybrid contribution -1.044 -0.853 0.560 1.459 sum 2.190 16.684 0.504 16.835 Atomic orbital electron populations 1.20205 0.86128 1.03932 1.03276 1.21695 0.99961 0.90101 1.06529 1.26651 0.80311 1.02374 1.01774 1.84736 1.30720 1.14498 1.64431 1.74343 1.20930 0.92359 1.16470 1.23437 0.91080 0.96296 1.10372 1.17536 0.85235 0.83781 0.77720 1.90693 1.19018 1.82349 1.52334 1.48119 1.09024 1.07478 1.68029 1.21914 0.80285 1.01302 1.01744 1.18922 0.95202 0.75357 0.96569 1.21632 1.47081 0.96005 0.93749 0.93229 1.25861 0.94653 0.96843 1.01513 1.70047 1.48205 1.07065 1.31199 0.85302 0.78167 0.78291 0.78639 1.19436 1.20281 1.19165 0.90604 0.87094 0.93012 0.70196 0.91627 0.90272 0.90653 0.97651 0.95167 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.06 71.24 0.72 -1.18 15 2 C -0.18 -4.74 6.34 -19.54 -0.12 -4.87 15 3 C -0.03 -0.50 12.24 67.14 0.82 0.32 15 4 O 0.13 2.99 11.18 71.94 0.80 3.79 15 5 N -0.34 -10.58 8.96 -49.52 -0.44 -11.02 15 6 C -0.06 -2.00 6.80 42.96 0.29 -1.71 15 7 C 0.57 27.14 7.69 86.93 0.67 27.81 15 8 O -0.57 -30.78 14.94 -3.68 -0.06 -30.83 15 9 N -0.60 -28.72 2.86 -854.01 -2.44 -31.16 15 10 C 0.09 3.40 9.33 127.77 1.19 4.60 15 11 C 0.26 14.80 5.10 85.63 0.44 15.24 15 12 C -0.55 -32.77 9.39 25.60 0.24 -32.53 15 13 H 0.05 2.99 7.81 -2.91 -0.02 2.97 15 14 C 0.01 0.63 5.46 84.66 0.46 1.09 15 15 N -0.93 -56.62 13.29 21.45 0.28 -56.33 15 16 Si 0.97 45.75 29.54 68.60 2.03 47.78 15 17 H -0.27 -12.45 7.11 99.48 0.71 -11.75 15 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 15 20 H 0.08 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.11 1.64 8.14 -2.38 -0.02 1.62 15 22 H 0.05 1.67 6.80 -2.39 -0.02 1.65 15 23 H 0.28 0.73 8.06 -2.91 -0.02 0.71 15 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.08 2.78 5.97 -2.39 -0.01 2.77 15 26 H 0.07 2.81 8.03 -2.39 -0.02 2.79 15 27 H 0.01 0.34 7.49 -2.39 -0.02 0.33 15 28 H 0.03 1.73 8.07 -2.39 -0.02 1.71 15 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 Total: -1.00 -76.95 259.46 6.04 -70.91 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: 1.16 Total: -1.90 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.71 Total: 8.76 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -2.60 Total: -98.51 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: 0.75 Total: -27.04 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.95 6.04 -70.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740474.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.521 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds