Wall clock time and date at job start Sun Mar 29 2020 21:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 111.00028 * 2 1 4 4 C 1.53002 * 117.49745 * 7.56961 * 3 2 1 5 5 C 1.52996 * 59.99933 * 252.51675 * 4 3 2 6 6 C 1.46896 * 111.00101 * 123.94810 * 2 1 3 7 7 C 1.53005 * 109.46883 * 56.05131 * 6 2 1 8 8 C 1.52994 * 109.46916 * 180.02562 * 7 6 2 9 9 C 1.52996 * 109.47119 * 299.99298 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.52996 * 109.47068 * 60.00573 * 9 8 7 19 19 C 1.52996 * 109.47256 * 176.04493 * 6 2 1 20 20 H 1.09000 * 109.46967 * 296.05143 * 1 2 3 21 21 H 1.09003 * 109.47399 * 56.04721 * 1 2 3 22 22 H 1.08999 * 109.47160 * 176.04966 * 1 2 3 23 23 H 1.08998 * 115.55143 * 153.28643 * 3 2 1 24 24 H 1.09002 * 117.50086 * 0.02562 * 4 3 2 25 25 H 1.09002 * 117.49579 * 145.02330 * 4 3 2 26 26 H 1.09008 * 117.49809 * 252.50572 * 5 4 3 27 27 H 1.09002 * 117.51840 * 107.49167 * 5 4 3 28 28 H 1.08994 * 109.47559 * 296.04661 * 6 2 1 29 29 H 1.08994 * 109.47407 * 59.99437 * 7 6 2 30 30 H 1.09001 * 109.46679 * 299.99683 * 7 6 2 31 31 H 1.09004 * 109.46806 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.47828 * 59.99866 * 8 7 6 33 33 H 1.08994 * 109.47405 * 300.00252 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.47532 * 60.00149 * 18 9 8 36 36 H 1.09001 * 109.47094 * 180.02562 * 18 9 8 37 37 H 1.09000 * 109.47665 * 300.00570 * 19 6 2 38 38 H 1.09004 * 109.47066 * 60.00378 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 0.9926 2.5131 0.1788 5 6 1.6352 2.2663 -1.1876 6 6 1.9954 -0.7658 1.1376 7 6 1.4261 -2.1856 1.1038 8 6 1.9739 -2.9831 2.2890 9 6 3.5001 -3.0435 2.2012 10 6 4.0397 -3.8296 3.3683 11 1 3.3618 -4.2449 4.0994 12 6 5.3985 -4.0239 3.4995 13 7 6.2239 -3.5184 2.6091 14 14 6.0667 -5.0047 4.9419 15 1 4.9398 -5.4617 5.7943 16 1 6.8134 -6.1840 4.4351 17 1 6.9782 -4.1485 5.7430 18 6 4.0695 -1.6239 2.2350 19 6 3.5216 -0.8263 1.0492 20 1 -0.3633 0.4513 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 2.9840 1.4956 0.4421 24 1 -0.0577 2.2466 0.2968 25 1 1.3213 3.3886 0.7388 26 1 2.3867 2.9796 -1.5266 27 1 1.0079 1.8375 -1.9691 28 1 1.7044 -0.2797 2.0688 29 1 1.7171 -2.6717 0.1727 30 1 0.3388 -2.1426 1.1668 31 1 1.5679 -3.9944 2.2651 32 1 1.6825 -2.4969 3.2200 33 1 3.7916 -3.5298 1.2703 34 1 7.1799 -3.6548 2.7016 35 1 3.7782 -1.1375 3.1660 36 1 5.1569 -1.6669 2.1720 37 1 3.8128 -1.3124 0.1181 38 1 3.9273 0.1852 1.0733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259755168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:20 Heat of formation + Delta-G solvation = 15.888922 kcal Electronic energy + Delta-G solvation = -15940.459646 eV Core-core repulsion = 13590.035486 eV Total energy + Delta-G solvation = -2350.424160 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.25127 -36.86210 -33.70672 -31.90983 -30.03961 -28.49742 -26.05932 -24.16504 -22.33542 -21.57985 -20.90698 -19.37544 -18.64577 -16.67361 -16.16991 -15.24014 -14.58645 -14.19563 -13.92182 -13.28536 -13.08912 -12.61641 -12.40900 -12.32983 -11.64708 -11.47952 -11.39347 -11.12675 -10.95646 -10.84705 -10.57270 -10.42147 -10.29252 -10.14808 -10.03223 -9.73681 -9.29719 -8.81345 -8.58478 -8.25224 -7.87546 -5.93170 -3.99045 3.32006 3.40164 3.44065 3.80981 4.20151 4.47989 4.92911 5.01976 5.13142 5.31634 5.36194 5.46130 5.54551 5.65517 5.71636 5.83412 5.94329 5.97271 6.07299 6.14626 6.20745 6.38307 6.48065 6.49402 6.59106 6.75549 6.82298 7.00898 7.18954 7.29654 7.34514 7.47114 7.60139 7.80972 8.08781 8.21726 8.53105 9.05553 9.65344 11.12438 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054259 B = 0.006277 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.920062 B = 4459.789892 C = 4758.302463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.508 5.508 3 C 0.025 3.975 4 C -0.224 4.224 5 C -0.175 4.175 6 C 0.091 3.909 7 C -0.109 4.109 8 C -0.107 4.107 9 C 0.048 3.952 10 C -0.511 4.511 11 H 0.053 0.947 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.107 4.107 19 C -0.108 4.108 20 H 0.026 0.974 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.123 0.877 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.026 0.974 34 H 0.258 0.742 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.922 8.912 -4.782 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.230 5.230 3 C -0.084 4.084 4 C -0.264 4.264 5 C -0.212 4.212 6 C -0.016 4.016 7 C -0.147 4.147 8 C -0.145 4.145 9 C 0.030 3.970 10 C -0.550 4.550 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.146 4.146 19 C -0.146 4.146 20 H 0.045 0.955 21 H 0.080 0.920 22 H 0.091 0.909 23 H 0.140 0.860 24 H 0.114 0.886 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.580 8.654 -5.247 13.268 hybrid contribution 0.118 -0.007 1.473 1.478 sum -8.462 8.647 -3.774 12.674 Atomic orbital electron populations 1.22502 0.88406 1.02236 0.99808 1.61957 1.06914 1.10267 1.43827 1.22784 0.98701 0.85114 1.01811 1.23524 0.99787 1.01979 1.01068 1.23004 1.03656 1.02783 0.91805 1.21731 0.96611 0.93566 0.89664 1.21668 0.98037 0.94487 1.00473 1.21618 0.99675 0.97738 0.95498 1.18661 0.88461 0.92776 0.97149 1.21288 0.91717 1.32608 1.09344 0.92826 1.24971 0.97184 0.95805 0.96094 1.69893 1.02766 1.45351 1.34955 0.86607 0.78955 0.79981 0.82861 1.19887 1.21109 1.21134 1.21617 1.03543 0.96066 0.93366 1.21742 0.92210 0.99260 1.01356 0.95549 0.92000 0.90863 0.85984 0.88557 0.89214 0.88833 0.88872 0.94675 0.91792 0.93656 0.93318 0.93648 0.95585 0.93186 0.95069 0.88910 0.92018 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 7.74 60.06 0.46 0.71 16 2 N -0.51 -7.88 4.84 -226.91 -1.10 -8.97 16 3 C 0.03 0.36 5.81 -67.71 -0.39 -0.04 16 4 C -0.22 -2.63 9.50 -26.73 -0.25 -2.88 16 5 C -0.17 -2.04 9.98 -26.73 -0.27 -2.31 16 6 C 0.09 1.61 1.94 -67.71 -0.13 1.48 16 7 C -0.11 -1.96 4.84 -26.73 -0.13 -2.09 16 8 C -0.11 -2.25 5.14 -26.74 -0.14 -2.39 16 9 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 10 C -0.51 -14.11 8.56 -34.44 -0.29 -14.41 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 13 N -0.89 -25.55 11.33 55.43 0.63 -24.92 16 14 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.11 -2.53 4.99 -26.71 -0.13 -2.66 16 19 C -0.11 -2.13 5.10 -26.71 -0.14 -2.26 16 20 H 0.03 0.34 7.24 -51.93 -0.38 -0.04 16 21 H 0.06 0.72 6.63 -51.93 -0.34 0.38 16 22 H 0.07 0.95 6.24 -51.93 -0.32 0.62 16 23 H 0.12 1.78 5.97 -51.93 -0.31 1.47 16 24 H 0.10 1.09 5.89 -51.93 -0.31 0.79 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.09 1.08 7.57 -51.93 -0.39 0.68 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 2.46 6.08 -51.93 -0.32 2.14 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.04 0.76 6.11 -51.93 -0.32 0.44 16 LS Contribution 285.44 15.07 4.30 4.30 Total: -1.00 -27.92 285.44 -9.25 -37.17 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.36 Total: 0.33 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.70 Total: -24.28 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.47 Total: -33.90 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.92 -9.25 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.060 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds