Wall clock time and date at job start Sun Mar 29 2020 21:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 111.00028 * 2 1 4 4 C 1.53002 * 117.49745 * 7.56961 * 3 2 1 5 5 C 1.52996 * 59.99933 * 252.51675 * 4 3 2 6 6 C 1.46896 * 111.00101 * 123.94810 * 2 1 3 7 7 C 1.53005 * 109.46883 * 56.05131 * 6 2 1 8 8 C 1.52994 * 109.46916 * 180.02562 * 7 6 2 9 9 C 1.52996 * 109.47119 * 299.99298 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.52996 * 109.47068 * 60.00573 * 9 8 7 19 19 C 1.52996 * 109.47256 * 176.04493 * 6 2 1 20 20 H 1.09000 * 109.46967 * 296.05143 * 1 2 3 21 21 H 1.09003 * 109.47399 * 56.04721 * 1 2 3 22 22 H 1.08999 * 109.47160 * 176.04966 * 1 2 3 23 23 H 1.08998 * 115.55143 * 153.28643 * 3 2 1 24 24 H 1.09002 * 117.50086 * 0.02562 * 4 3 2 25 25 H 1.09002 * 117.49579 * 145.02330 * 4 3 2 26 26 H 1.09008 * 117.49809 * 252.50572 * 5 4 3 27 27 H 1.09002 * 117.51840 * 107.49167 * 5 4 3 28 28 H 1.08994 * 109.47559 * 296.04661 * 6 2 1 29 29 H 1.08994 * 109.47407 * 59.99437 * 7 6 2 30 30 H 1.09001 * 109.46679 * 299.99683 * 7 6 2 31 31 H 1.09004 * 109.46806 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.47828 * 59.99866 * 8 7 6 33 33 H 1.08994 * 109.47405 * 300.00252 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.47532 * 60.00149 * 18 9 8 36 36 H 1.09001 * 109.47094 * 180.02562 * 18 9 8 37 37 H 1.09000 * 109.47665 * 300.00570 * 19 6 2 38 38 H 1.09004 * 109.47066 * 60.00378 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 0.9926 2.5131 0.1788 5 6 1.6352 2.2663 -1.1876 6 6 1.9954 -0.7658 1.1376 7 6 1.4261 -2.1856 1.1038 8 6 1.9739 -2.9831 2.2890 9 6 3.5001 -3.0435 2.2012 10 6 4.0397 -3.8296 3.3683 11 1 3.3618 -4.2449 4.0994 12 6 5.3985 -4.0239 3.4995 13 7 6.2239 -3.5184 2.6091 14 14 6.0667 -5.0047 4.9419 15 1 4.9398 -5.4617 5.7943 16 1 6.8134 -6.1840 4.4351 17 1 6.9782 -4.1485 5.7430 18 6 4.0695 -1.6239 2.2350 19 6 3.5216 -0.8263 1.0492 20 1 -0.3633 0.4513 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 2.9840 1.4956 0.4421 24 1 -0.0577 2.2466 0.2968 25 1 1.3213 3.3886 0.7388 26 1 2.3867 2.9796 -1.5266 27 1 1.0079 1.8375 -1.9691 28 1 1.7044 -0.2797 2.0688 29 1 1.7171 -2.6717 0.1727 30 1 0.3388 -2.1426 1.1668 31 1 1.5679 -3.9944 2.2651 32 1 1.6825 -2.4969 3.2200 33 1 3.7916 -3.5298 1.2703 34 1 7.1799 -3.6548 2.7016 35 1 3.7782 -1.1375 3.1660 36 1 5.1569 -1.6669 2.1720 37 1 3.8128 -1.3124 0.1181 38 1 3.9273 0.1852 1.0733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:20 Heat of formation + Delta-G solvation = 0.284539 kcal Electronic energy + Delta-G solvation = -15941.136303 eV Core-core repulsion = 13590.035486 eV Total energy + Delta-G solvation = -2351.100817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52940 -38.32497 -35.30581 -33.63268 -31.68162 -30.17739 -27.43579 -25.94318 -23.29717 -23.14259 -22.43599 -20.76817 -20.25570 -18.42044 -17.65861 -16.69758 -16.23593 -15.67023 -15.12960 -14.83706 -14.70697 -14.26627 -14.03026 -13.52150 -13.23019 -13.00570 -12.85580 -12.62795 -12.44781 -12.35355 -12.16520 -12.00106 -11.85140 -11.65978 -11.53428 -11.16040 -11.13692 -10.70311 -10.43458 -10.35136 -9.00914 -8.05867 -6.19976 1.40216 1.42066 1.53372 2.44553 2.74542 3.15300 3.20598 3.85600 3.95221 4.01648 4.17877 4.19347 4.33458 4.44352 4.57049 4.63226 4.73909 4.78611 4.79951 4.85354 4.89906 4.92720 4.98586 5.10493 5.12854 5.20733 5.27372 5.37155 5.42047 5.48894 5.63881 5.71514 6.05321 6.14747 6.22169 6.27661 6.43323 6.93204 7.48030 8.98349 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054259 B = 0.006277 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.920062 B = 4459.789892 C = 4758.302463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.517 5.517 3 C -0.005 4.005 4 C -0.210 4.210 5 C -0.162 4.162 6 C 0.102 3.898 7 C -0.100 4.100 8 C -0.100 4.100 9 C 0.044 3.956 10 C -0.534 4.534 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.918 5.918 14 Si 0.952 3.048 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.098 4.098 19 C -0.097 4.097 20 H 0.032 0.968 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.032 0.968 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.047 0.953 33 H -0.009 1.009 34 H 0.259 0.741 35 H 0.025 0.975 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 9.875 -4.783 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.115 4.115 4 C -0.248 4.248 5 C -0.200 4.200 6 C -0.006 4.006 7 C -0.138 4.138 8 C -0.138 4.138 9 C 0.025 3.975 10 C -0.572 4.572 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.778 3.222 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.137 4.137 19 C -0.135 4.135 20 H 0.050 0.950 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.127 0.873 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.107 9.625 -5.254 14.913 hybrid contribution 0.600 -0.285 1.445 1.590 sum -9.507 9.341 -3.810 13.862 Atomic orbital electron populations 1.22579 0.86713 1.02831 1.00885 1.61908 1.08459 1.11199 1.42322 1.22813 0.99021 0.85114 1.04516 1.23569 0.99534 1.00848 1.00896 1.23078 1.03621 1.01682 0.91570 1.21454 0.94667 0.93803 0.90646 1.21568 0.99682 0.94119 0.98440 1.21484 0.96739 0.98552 0.97068 1.18641 0.91394 0.92830 0.94589 1.21668 0.92190 1.33181 1.10127 0.93105 1.25753 0.97533 0.96806 0.98653 1.70039 1.02952 1.46240 1.36524 0.85595 0.78328 0.78533 0.79731 1.19171 1.20703 1.20635 1.21393 1.01454 0.96043 0.94821 1.21556 0.94339 0.99029 0.98571 0.94966 0.90230 0.90677 0.87259 0.87794 0.88207 0.87579 0.88438 0.95016 0.92648 0.90670 0.93252 0.93465 0.99034 0.93148 0.95593 0.92325 0.93573 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 7.74 127.69 0.99 1.39 16 2 N -0.52 -15.03 4.84 -871.80 -4.22 -19.25 16 3 C -0.01 -0.14 5.81 44.91 0.26 0.12 16 4 C -0.21 -4.27 9.50 30.59 0.29 -3.98 16 5 C -0.16 -3.32 9.98 30.59 0.31 -3.02 16 6 C 0.10 3.50 1.94 44.92 0.09 3.58 16 7 C -0.10 -3.50 4.84 30.59 0.15 -3.35 16 8 C -0.10 -4.20 5.14 30.59 0.16 -4.04 16 9 C 0.04 2.25 2.10 -11.54 -0.02 2.23 16 10 C -0.53 -30.07 8.56 25.60 0.22 -29.85 16 11 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 12 C 0.01 0.61 5.31 84.66 0.45 1.06 16 13 N -0.92 -54.13 11.33 21.45 0.24 -53.89 16 14 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 C -0.10 -4.78 4.99 30.61 0.15 -4.63 16 19 C -0.10 -3.88 5.10 30.61 0.16 -3.72 16 20 H 0.03 0.71 7.24 -2.39 -0.02 0.70 16 21 H 0.08 1.57 6.63 -2.39 -0.02 1.56 16 22 H 0.07 1.71 6.24 -2.39 -0.01 1.69 16 23 H 0.11 3.08 5.97 -2.39 -0.01 3.07 16 24 H 0.10 1.97 5.89 -2.39 -0.01 1.96 16 25 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.10 1.94 7.57 -2.39 -0.02 1.92 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.19 6.35 -2.39 -0.02 2.18 16 31 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.26 14.52 8.31 -92.70 -0.77 13.74 16 35 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 3.24 6.08 -2.39 -0.01 3.23 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 2.04 6.11 -2.38 -0.01 2.02 16 Total: -1.00 -60.54 285.44 2.26 -58.28 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.01 Total: 12.71 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 3.19 Total: -44.21 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -3.98 Total: -73.14 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.54 2.26 -58.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.569 kcal (2) G-P(sol) polarization free energy of solvation -60.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds