Wall clock time and date at job start Sun Mar 29 2020 22:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48503 * 109.46988 * 269.99698 * 3 2 1 5 5 H 1.48493 * 109.47067 * 29.99956 * 3 2 1 6 6 H 1.48507 * 109.47125 * 150.00266 * 3 2 1 7 7 C 1.37881 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99808 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00281 * 180.02562 * 7 2 1 10 10 N 1.46492 * 109.47311 * 179.97438 * 9 7 2 11 11 C 1.34775 * 124.17720 * 270.04118 * 10 9 7 12 12 O 1.21231 * 127.15625 * 359.97438 * 11 10 9 13 13 C 1.51580 * 105.68228 * 179.74509 * 11 10 9 14 14 N 1.47307 * 103.59794 * 0.33148 * 13 11 10 15 15 C 1.46501 * 126.69399 * 179.97438 * 14 13 11 16 16 C 1.53001 * 117.51946 * 170.99384 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47992 * 16 15 14 18 18 C 1.33787 * 124.17904 * 89.99961 * 10 9 7 19 19 O 1.21541 * 123.77296 * 0.03280 * 18 10 9 20 20 H 0.97001 * 119.99669 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47051 * 59.99235 * 9 7 2 22 22 H 1.09005 * 109.46564 * 299.99813 * 9 7 2 23 23 H 1.09004 * 110.69027 * 241.75519 * 13 11 10 24 24 H 1.09003 * 110.50879 * 118.81206 * 13 11 10 25 25 H 1.09002 * 115.54982 * 25.29180 * 15 14 13 26 26 H 1.09001 * 117.49733 * 214.97423 * 16 15 14 27 27 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 28 28 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 29 29 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 4.2509 -3.2897 1.1149 12 8 4.1208 -2.9243 2.2634 13 6 4.7244 -4.6470 0.6339 14 7 4.6889 -4.5261 -0.8338 15 6 5.0526 -5.5595 -1.8063 16 6 4.7392 -5.2863 -3.2788 17 6 6.1862 -5.2422 -2.7837 18 6 4.2507 -3.2838 -1.1069 19 8 4.0996 -2.8532 -2.2334 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6809 0.8904 22 1 3.8752 -0.6798 -0.8895 23 1 4.0478 -5.4324 0.9706 24 1 5.7403 -4.8411 0.9781 25 1 4.9638 -6.5876 -1.4552 26 1 4.4442 -6.1347 -3.8963 27 1 4.2619 -4.3376 -3.5240 28 1 6.6611 -4.2644 -2.7033 29 1 6.8432 -6.0616 -3.0756 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261035990.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:06 Heat of formation + Delta-G solvation = -1.480199 kcal Electronic energy + Delta-G solvation = -15501.493901 eV Core-core repulsion = 12813.224459 eV Total energy + Delta-G solvation = -2688.269441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.74927 -38.32929 -36.82567 -35.47801 -33.94014 -32.26831 -28.53758 -27.19586 -23.86228 -22.54392 -22.23376 -21.32163 -19.13655 -17.33650 -17.03477 -16.23824 -16.00568 -15.71133 -14.81447 -14.32423 -14.02354 -13.63306 -13.59619 -13.07230 -12.96557 -12.47954 -11.99173 -11.56397 -11.26409 -11.10970 -10.69161 -10.53976 -10.36472 -10.05293 -9.65402 -9.49176 -8.78180 -8.66556 -8.45325 -6.16149 -4.17761 2.15662 2.49149 3.26056 3.31475 3.33267 3.42122 3.51930 3.96532 4.33281 4.45930 4.74168 4.85129 4.97559 5.14876 5.23769 5.26195 5.40285 5.66901 5.93579 6.13387 6.31491 6.43176 6.66227 6.72239 6.86878 7.41658 7.79710 7.97317 8.32677 8.67356 8.83554 9.40333 10.96824 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.008830 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.186588 B = 3170.278117 C = 3560.776478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.221 3.779 10 N -0.554 5.554 11 C 0.519 3.481 12 O -0.475 6.475 13 C 0.067 3.933 14 N -0.612 5.612 15 C 0.107 3.893 16 C -0.186 4.186 17 C -0.193 4.193 18 C 0.702 3.298 19 O -0.536 6.536 20 H 0.267 0.733 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.134 0.866 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.095 0.905 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.127 -11.271 -2.135 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.094 0.906 9 C 0.102 3.898 10 N -0.296 5.296 11 C 0.305 3.695 12 O -0.346 6.346 13 C -0.060 4.060 14 N -0.350 5.350 15 C 0.004 3.996 16 C -0.223 4.223 17 C -0.232 4.232 18 C 0.405 3.595 19 O -0.410 6.410 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.133 0.867 24 H 0.132 0.868 25 H 0.152 0.848 26 H 0.117 0.883 27 H 0.149 0.851 28 H 0.114 0.886 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.792 -10.682 -2.186 16.060 hybrid contribution 0.240 0.804 0.036 0.840 sum 12.031 -9.878 -2.150 15.715 Atomic orbital electron populations 1.69880 1.06184 1.27284 1.49442 1.24784 0.94832 0.98941 0.93980 0.86846 0.80391 0.83581 0.78953 1.19640 1.20648 1.18847 1.21116 0.88242 0.95342 1.52853 0.90554 1.19930 0.96736 0.74339 0.98815 1.46524 1.59212 1.17265 1.06637 1.20657 0.76611 0.86857 0.85326 1.90762 1.50215 1.75429 1.18147 1.22443 1.04573 0.98087 0.80853 1.46930 1.69697 1.12766 1.05613 1.21262 1.03358 0.89840 0.85145 1.23714 0.98343 1.06039 0.94210 1.23419 0.92235 1.03496 1.04073 1.15937 0.77839 0.80788 0.84958 1.90829 1.56884 1.72797 1.20460 0.92264 0.93260 0.93537 0.86656 0.86813 0.84828 0.88334 0.85065 0.88623 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.96 55.43 0.77 -26.77 15 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 15 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 15 7 C -0.54 -15.76 9.94 -34.44 -0.34 -16.10 15 8 H 0.08 2.46 8.06 -52.48 -0.42 2.03 15 9 C 0.22 5.54 4.52 -5.20 -0.02 5.52 15 10 N -0.55 -12.08 2.59 -122.03 -0.32 -12.40 15 11 C 0.52 9.89 8.32 -10.55 -0.09 9.80 15 12 O -0.47 -10.32 17.76 5.60 0.10 -10.22 15 13 C 0.07 0.86 7.66 -4.32 -0.03 0.83 15 14 N -0.61 -9.24 3.35 -172.38 -0.58 -9.82 15 15 C 0.11 1.26 7.01 -67.93 -0.48 0.78 15 16 C -0.19 -2.34 9.83 -26.73 -0.26 -2.60 15 17 C -0.19 -2.12 10.40 -26.73 -0.28 -2.39 15 18 C 0.70 14.26 8.21 -88.02 -0.72 13.54 15 19 O -0.54 -12.34 14.38 5.33 0.08 -12.26 15 20 H 0.27 7.67 8.31 -40.82 -0.34 7.33 15 21 H 0.05 1.23 7.06 -51.93 -0.37 0.86 15 22 H 0.05 1.17 7.29 -51.93 -0.38 0.79 15 23 H 0.12 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.11 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.13 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.13 2.20 5.51 -51.93 -0.29 1.91 15 28 H 0.10 1.23 8.14 -51.93 -0.42 0.80 15 29 H 0.10 0.81 8.14 -51.93 -0.42 0.38 15 LS Contribution 256.69 15.07 3.87 3.87 Total: -1.00 -34.49 256.69 -6.23 -40.71 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -3.16 Total: -1.49 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -2.32 Total: 11.56 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.12 Total: -48.99 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.18 Total: -22.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.49 -6.23 -40.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035990.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.231 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds