Wall clock time and date at job start Sun Mar 29 2020 21:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36481 * 127.12593 * 2 1 4 4 C 1.50699 * 126.31372 * 359.97438 * 3 2 1 5 5 C 1.47193 * 109.47299 * 270.30015 * 4 3 2 6 6 N 4.16748 * 91.84809 * 323.81675 * 2 1 3 7 7 N 1.30488 * 107.37342 * 180.26203 * 3 2 1 8 8 N 1.28534 * 110.05779 * 359.76159 * 7 3 2 9 9 C 1.31401 * 109.79964 * 359.97438 * 8 7 3 10 10 S 1.76199 * 126.49460 * 179.97438 * 9 8 7 11 11 C 1.76195 * 99.99986 * 0.02562 * 10 9 8 12 12 H 1.08001 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.38673 * 119.99983 * 179.97438 * 11 10 9 14 14 N 1.31639 * 119.99828 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99996 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47070 * 59.99985 * 15 13 11 17 17 H 1.48493 * 109.47189 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46903 * 300.00074 * 15 13 11 19 19 H 1.08994 * 109.47481 * 270.15943 * 1 2 3 20 20 H 1.09001 * 109.46706 * 30.15987 * 1 2 3 21 21 H 1.09007 * 109.46924 * 150.15416 * 1 2 3 22 22 H 1.09004 * 109.47223 * 30.30159 * 4 3 2 23 23 H 1.09007 * 109.47459 * 150.29563 * 4 3 2 24 24 H 0.97002 * 119.99735 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2887 1.0882 0.0000 4 6 1.8592 2.5327 -0.0005 5 6 1.7129 3.0005 -1.3884 6 7 1.5994 3.3620 -2.4591 7 7 3.5168 0.6472 -0.0057 8 7 3.5237 -0.6381 -0.0042 9 6 2.2898 -1.0898 0.0031 10 16 1.7926 -2.7802 0.0071 11 6 3.3709 -3.5633 -0.0004 12 1 4.2704 -2.9655 -0.0052 13 6 3.4583 -4.9473 0.0008 14 7 2.3620 -5.6760 0.0072 15 14 5.1316 -5.7776 -0.0065 16 1 5.8922 -5.3690 1.2017 17 1 4.9528 -7.2517 -0.0044 18 1 5.8801 -5.3719 -1.2233 19 1 -0.3634 0.0029 1.0276 20 1 -0.3633 0.8886 -0.5163 21 1 -0.3633 -0.8914 -0.5115 22 1 0.9050 2.6282 0.5176 23 1 2.6111 3.1356 0.5088 24 1 2.4231 -6.6440 0.0077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306163839.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:17 Heat of formation + Delta-G solvation = 96.155033 kcal Electronic energy + Delta-G solvation = -12359.388307 eV Core-core repulsion = 10014.565174 eV Total energy + Delta-G solvation = -2344.823132 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.043 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.19415 -36.79742 -34.53303 -32.69353 -32.34106 -28.18865 -27.11562 -25.65939 -22.05511 -21.03182 -18.11899 -17.88139 -16.55001 -15.64164 -15.51629 -14.95944 -14.72576 -14.28370 -13.23257 -13.08941 -12.93469 -12.79745 -12.23609 -11.88164 -11.48081 -11.13878 -11.12151 -10.73554 -10.24625 -9.90912 -9.81203 -9.58538 -8.93379 -8.93007 -6.86122 -6.50550 -4.25680 2.06055 2.35775 2.66382 2.69486 3.21026 3.21927 3.25476 3.30782 3.41442 3.98418 4.00456 4.50434 4.76393 4.90868 4.93764 5.01552 5.23253 5.27030 5.53564 5.98449 6.25296 6.59792 7.20019 7.44329 7.53979 8.33487 9.01648 9.33271 10.57646 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.050327 B = 0.007031 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.230909 B = 3981.208818 C = 4297.655764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.477 5.477 3 C 0.121 3.879 4 C 0.079 3.921 5 C 0.211 3.789 6 N -0.427 5.427 7 N -0.271 5.271 8 N -0.306 5.306 9 C 0.177 3.823 10 S 0.140 5.860 11 C -0.534 4.534 12 H 0.105 0.895 13 C 0.076 3.924 14 N -0.878 5.878 15 Si 0.934 3.066 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.269 1.269 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.094 0.906 22 H 0.123 0.877 23 H 0.140 0.860 24 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 10.156 3.183 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.175 5.175 3 C -0.150 4.150 4 C 0.037 3.963 5 C -0.108 4.108 6 N -0.104 5.104 7 N -0.112 5.112 8 N -0.152 5.152 9 C -0.194 4.194 10 S 0.372 5.628 11 C -0.683 4.683 12 H 0.123 0.877 13 C -0.133 4.133 14 N -0.513 5.513 15 Si 0.759 3.241 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.194 1.194 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.141 0.859 23 H 0.157 0.843 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.909 9.964 1.577 11.691 hybrid contribution 0.699 -0.194 0.386 0.822 sum -5.210 9.770 1.963 11.245 Atomic orbital electron populations 1.21999 0.76045 1.04783 1.03845 1.46111 1.07988 1.05183 1.58180 1.23761 0.88152 0.90104 1.12965 1.17201 1.05385 0.87978 0.85768 1.28896 0.93357 0.93577 0.94994 1.81198 1.08780 1.08864 1.11513 1.73912 1.16902 1.05052 1.15352 1.74797 1.16418 1.00851 1.23089 1.28459 0.89189 0.98689 1.03059 1.83424 1.13130 0.79996 1.86245 1.23164 0.92516 0.93689 1.58913 0.87679 1.25078 0.98938 0.95936 0.93387 1.69934 1.27802 1.06889 1.46702 0.85954 0.81265 0.77321 0.79563 1.19367 1.20782 1.19432 0.90046 0.89959 0.88774 0.85927 0.84263 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.78 59.85 0.64 1.51 14 2 N -0.48 -8.08 3.21 -120.87 -0.39 -8.46 14 3 C 0.12 1.95 7.27 -154.10 -1.12 0.83 14 4 C 0.08 0.75 5.90 -30.67 -0.18 0.57 14 5 C 0.21 2.63 15.41 -20.77 -0.32 2.31 14 6 N -0.43 -6.54 18.54 42.14 0.78 -5.76 14 7 N -0.27 -5.66 12.18 32.97 0.40 -5.26 14 8 N -0.31 -7.42 11.04 30.72 0.34 -7.08 14 9 C 0.18 3.91 8.06 -88.11 -0.71 3.20 14 10 S 0.14 3.36 21.39 -107.50 -2.30 1.06 14 11 C -0.53 -14.68 9.37 30.89 0.29 -14.39 14 12 H 0.11 2.99 6.93 -52.49 -0.36 2.62 14 13 C 0.08 2.04 5.49 -17.47 -0.10 1.94 14 14 N -0.88 -24.06 13.22 55.48 0.73 -23.33 14 15 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 14 16 H -0.27 -6.00 7.11 56.52 0.40 -5.59 14 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 14 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 14 19 H 0.08 0.74 8.14 -51.93 -0.42 0.31 14 20 H 0.08 0.68 7.88 -51.93 -0.41 0.27 14 21 H 0.09 1.12 7.86 -51.93 -0.41 0.71 14 22 H 0.12 0.65 7.93 -51.93 -0.41 0.24 14 23 H 0.14 0.98 8.14 -51.93 -0.42 0.55 14 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 14 LS Contribution 247.94 15.07 3.74 3.74 Total: -1.00 -33.89 247.94 -4.78 -38.67 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -1.57 Total: -5.57 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.49 Total: -4.03 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 1.87 Total: -49.88 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.30 Total: 1.06 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.89 -4.78 -38.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306163839.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.825 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds