Wall clock time and date at job start Sun Mar 29 2020 21:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36481 * 127.12593 * 2 1 4 4 C 1.50699 * 126.31372 * 359.97438 * 3 2 1 5 5 C 1.47193 * 109.47299 * 270.30015 * 4 3 2 6 6 N 4.16748 * 91.84809 * 323.81675 * 2 1 3 7 7 N 1.30488 * 107.37342 * 180.26203 * 3 2 1 8 8 N 1.28534 * 110.05779 * 359.76159 * 7 3 2 9 9 C 1.31401 * 109.79964 * 359.97438 * 8 7 3 10 10 S 1.76199 * 126.49460 * 179.97438 * 9 8 7 11 11 C 1.76195 * 99.99986 * 0.02562 * 10 9 8 12 12 H 1.08001 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.38673 * 119.99983 * 179.97438 * 11 10 9 14 14 N 1.31639 * 119.99828 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99996 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47070 * 59.99985 * 15 13 11 17 17 H 1.48493 * 109.47189 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46903 * 300.00074 * 15 13 11 19 19 H 1.08994 * 109.47481 * 270.15943 * 1 2 3 20 20 H 1.09001 * 109.46706 * 30.15987 * 1 2 3 21 21 H 1.09007 * 109.46924 * 150.15416 * 1 2 3 22 22 H 1.09004 * 109.47223 * 30.30159 * 4 3 2 23 23 H 1.09007 * 109.47459 * 150.29563 * 4 3 2 24 24 H 0.97002 * 119.99735 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2887 1.0882 0.0000 4 6 1.8592 2.5327 -0.0005 5 6 1.7129 3.0005 -1.3884 6 7 1.5994 3.3620 -2.4591 7 7 3.5168 0.6472 -0.0057 8 7 3.5237 -0.6381 -0.0042 9 6 2.2898 -1.0898 0.0031 10 16 1.7926 -2.7802 0.0071 11 6 3.3709 -3.5633 -0.0004 12 1 4.2704 -2.9655 -0.0052 13 6 3.4583 -4.9473 0.0008 14 7 2.3620 -5.6760 0.0072 15 14 5.1316 -5.7776 -0.0065 16 1 5.8922 -5.3690 1.2017 17 1 4.9528 -7.2517 -0.0044 18 1 5.8801 -5.3719 -1.2233 19 1 -0.3634 0.0029 1.0276 20 1 -0.3633 0.8886 -0.5163 21 1 -0.3633 -0.8914 -0.5115 22 1 0.9050 2.6282 0.5176 23 1 2.6111 3.1356 0.5088 24 1 2.4231 -6.6440 0.0077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306163839.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:17 Heat of formation + Delta-G solvation = 73.153546 kcal Electronic energy + Delta-G solvation = -12360.385726 eV Core-core repulsion = 10014.565174 eV Total energy + Delta-G solvation = -2345.820552 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.043 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.69408 -37.86287 -35.88478 -34.71462 -33.52039 -29.55150 -28.24361 -27.67562 -23.61644 -22.39035 -19.91763 -18.99990 -17.94475 -17.02626 -16.98127 -16.87323 -15.92065 -15.35675 -14.86342 -14.26302 -13.97271 -13.80598 -13.45181 -13.33570 -12.98673 -12.93993 -12.72320 -12.38143 -11.99000 -11.52467 -11.48454 -11.01131 -10.80639 -10.69329 -8.71161 -8.51192 -6.28806 0.67842 0.77032 1.38465 1.42220 1.50892 1.53215 1.72010 1.87134 2.01920 2.14908 2.89909 3.04025 3.04842 3.45484 3.81185 4.12948 4.43190 4.52739 4.68416 4.70458 4.93496 5.11041 5.48057 5.94372 6.22852 6.48071 6.97219 7.78580 8.57731 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.050327 B = 0.007031 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.230909 B = 3981.208818 C = 4297.655764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.468 5.468 3 C 0.158 3.842 4 C 0.084 3.916 5 C 0.236 3.764 6 N -0.480 5.480 7 N -0.319 5.319 8 N -0.351 5.351 9 C 0.156 3.844 10 S 0.122 5.878 11 C -0.561 4.561 12 H 0.084 0.916 13 C 0.033 3.967 14 N -0.903 5.903 15 Si 0.992 3.008 16 H -0.267 1.267 17 H -0.266 1.266 18 H -0.271 1.271 19 H 0.112 0.888 20 H 0.123 0.877 21 H 0.084 0.916 22 H 0.183 0.817 23 H 0.175 0.825 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 11.823 3.975 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.163 5.163 3 C -0.115 4.115 4 C 0.043 3.957 5 C -0.082 4.082 6 N -0.157 5.157 7 N -0.159 5.159 8 N -0.196 5.196 9 C -0.218 4.218 10 S 0.353 5.647 11 C -0.709 4.709 12 H 0.103 0.897 13 C -0.174 4.174 14 N -0.539 5.539 15 Si 0.814 3.186 16 H -0.192 1.192 17 H -0.190 1.190 18 H -0.196 1.196 19 H 0.130 0.870 20 H 0.141 0.859 21 H 0.103 0.897 22 H 0.200 0.800 23 H 0.192 0.808 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.944 11.665 2.370 13.781 hybrid contribution 0.927 -0.477 0.158 1.055 sum -6.017 11.188 2.527 12.952 Atomic orbital electron populations 1.22529 0.72516 1.06434 1.06442 1.46471 1.09991 1.03800 1.56063 1.24892 0.86794 0.92373 1.07435 1.17830 1.09547 0.83537 0.84826 1.29220 0.91655 0.92367 0.95002 1.81248 1.10929 1.10447 1.13110 1.73828 1.19734 1.03825 1.18547 1.74674 1.18227 1.02838 1.23878 1.28032 0.89896 0.98888 1.04944 1.83007 1.11668 0.81706 1.88328 1.23283 0.93488 0.94474 1.59680 0.89749 1.25882 1.02362 0.96272 0.92839 1.69988 1.29388 1.07306 1.47189 0.85083 0.77114 0.77091 0.79291 1.19151 1.19010 1.19630 0.86952 0.85855 0.89681 0.79968 0.80768 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 10.78 127.77 1.38 2.54 14 2 N -0.47 -14.74 3.21 -536.31 -1.72 -16.46 14 3 C 0.16 4.59 7.27 137.67 1.00 5.59 14 4 C 0.08 1.14 5.90 28.04 0.17 1.31 14 5 C 0.24 4.99 15.41 89.44 1.38 6.36 14 6 N -0.48 -13.62 18.54 20.00 0.37 -13.25 14 7 N -0.32 -13.08 12.18 -49.60 -0.60 -13.68 14 8 N -0.35 -17.31 11.04 -56.71 -0.63 -17.93 14 9 C 0.16 6.95 8.06 179.47 1.45 8.40 14 10 S 0.12 6.01 21.39 -56.49 -1.21 4.80 14 11 C -0.56 -31.85 9.37 67.92 0.64 -31.21 14 12 H 0.08 5.02 6.93 -2.91 -0.02 5.00 14 13 C 0.03 1.80 5.49 84.83 0.47 2.26 14 14 N -0.90 -50.11 13.22 21.62 0.29 -49.83 14 15 Si 0.99 43.64 29.55 68.60 2.03 45.67 14 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 14 17 H -0.27 -10.85 7.11 99.48 0.71 -10.15 14 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 14 19 H 0.11 1.51 8.14 -2.39 -0.02 1.49 14 20 H 0.12 1.35 7.88 -2.39 -0.02 1.33 14 21 H 0.08 1.84 7.86 -2.38 -0.02 1.82 14 22 H 0.18 0.49 7.93 -2.39 -0.02 0.47 14 23 H 0.18 1.40 8.14 -2.38 -0.02 1.38 14 24 H 0.28 14.42 8.31 -92.71 -0.77 13.65 14 Total: -1.00 -78.65 247.94 6.23 -72.43 By element: Atomic # 1 Polarization: -8.23 SS G_CDS: 1.23 Total: -7.00 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 6.47 Total: -4.74 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -2.29 Total: -111.15 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.21 Total: 4.80 kcal Total: -78.65 6.23 -72.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306163839.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.579 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds