Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38480 * 119.88300 * 269.72201 * 10 9 7 12 12 C 1.38206 * 120.34421 * 179.72397 * 11 10 9 13 13 C 1.38308 * 120.12410 * 0.55401 * 12 11 10 14 14 F 1.35105 * 120.11189 * 179.70327 * 13 12 11 15 15 C 1.39883 * 119.77647 * 359.72394 * 13 12 11 16 16 C 1.47554 * 120.17558 * 179.97438 * 15 13 12 17 17 O 1.21487 * 119.99924 * 0.02562 * 16 15 13 18 18 O 1.34730 * 120.00250 * 180.02562 * 16 15 13 19 19 C 1.37826 * 119.89008 * 90.00255 * 10 9 7 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08001 * 119.82606 * 0.02562 * 11 10 9 24 24 H 1.08001 * 119.93659 * 180.25574 * 12 11 10 25 25 H 0.96696 * 117.00172 * 179.97438 * 18 16 15 26 26 H 1.08008 * 120.06194 * 359.96747 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6742 -4.1675 -1.2133 12 6 3.5766 -5.2142 -1.2291 13 6 4.0338 -5.7544 -0.0408 14 9 4.9114 -6.7815 -0.0565 15 6 3.5843 -5.2340 1.1773 16 6 4.0659 -5.8040 2.4503 17 8 4.8553 -6.7274 2.4422 18 8 3.6302 -5.3004 3.6215 19 6 2.6764 -4.1721 1.1823 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.3172 -3.7520 -2.1441 24 1 3.9217 -5.6142 -2.1711 25 1 3.9735 -5.7068 4.4290 26 1 2.3252 -3.7648 2.1190 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306904601.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = -124.852118 kcal Electronic energy + Delta-G solvation = -14517.106152 eV Core-core repulsion = 11667.733847 eV Total energy + Delta-G solvation = -2849.372305 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.59526 -40.06569 -38.39552 -35.92676 -33.51310 -31.34633 -31.12149 -27.02054 -24.51550 -23.36478 -22.08560 -20.09558 -17.91475 -17.41940 -16.48043 -16.31644 -15.85733 -15.73627 -14.94137 -14.72028 -14.03487 -13.57369 -13.06409 -12.96568 -12.63953 -11.97368 -11.55287 -11.40243 -11.35683 -11.13386 -10.76397 -10.65553 -10.30333 -9.77146 -9.56811 -8.88613 -8.53677 -8.02349 -6.15789 -4.20711 0.88266 1.58700 2.74718 3.11641 3.23398 3.31857 3.36230 4.00294 4.37107 4.45143 4.94391 5.19914 5.23456 5.38857 5.60599 5.73984 6.07950 6.31649 6.43047 6.51523 6.66251 6.78865 7.18165 7.39173 7.56515 7.79398 8.00975 8.15521 8.84498 9.44510 10.93943 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.035009 B = 0.007107 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.593600 B = 3938.871002 C = 4294.595506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.048 3.952 10 C -0.058 4.058 11 C -0.056 4.056 12 C -0.168 4.168 13 C 0.132 3.868 14 F -0.128 7.128 15 C -0.172 4.172 16 C 0.530 3.470 17 O -0.515 6.515 18 O -0.507 6.507 19 C -0.037 4.037 20 H 0.263 0.737 21 H 0.034 0.966 22 H 0.034 0.966 23 H 0.138 0.862 24 H 0.137 0.863 25 H 0.411 0.589 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 -8.371 1.577 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.011 3.989 10 C -0.059 4.059 11 C -0.074 4.074 12 C -0.187 4.187 13 C 0.112 3.888 14 F -0.106 7.106 15 C -0.174 4.174 16 C 0.376 3.624 17 O -0.405 6.405 18 O -0.319 6.319 19 C -0.055 4.055 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.156 0.844 24 H 0.155 0.845 25 H 0.269 0.731 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.567 -8.364 1.219 9.607 hybrid contribution 0.856 0.523 0.528 1.134 sum 5.423 -7.842 1.747 9.693 Atomic orbital electron populations 1.69956 1.06058 1.26961 1.50003 1.25000 0.94885 0.99347 0.94899 0.86466 0.80143 0.83321 0.77726 1.19619 1.20876 1.20848 1.21078 0.93132 0.89706 1.51708 0.92269 1.18401 0.92308 0.89093 0.99058 1.20818 0.97525 0.96222 0.91290 1.21322 0.93782 0.92969 0.99345 1.21051 1.01410 0.99863 0.96366 1.17546 0.90987 0.87232 0.93047 1.91532 1.65982 1.55825 1.97271 1.19047 1.06293 1.03157 0.88894 1.20726 0.77731 0.79779 0.84210 1.90903 1.33162 1.28297 1.88129 1.84613 1.68516 1.62136 1.16596 1.21365 0.92580 0.91566 1.00026 0.92720 0.94746 0.94739 0.84426 0.84506 0.73143 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 13.29 55.43 0.74 -24.25 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 7 C -0.52 -13.52 9.09 -34.44 -0.31 -13.83 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.05 1.12 5.10 -29.03 -0.15 0.98 15 10 C -0.06 -1.13 5.06 -104.68 -0.53 -1.66 15 11 C -0.06 -0.94 9.69 -39.50 -0.38 -1.33 15 12 C -0.17 -2.58 10.01 -39.57 -0.40 -2.98 15 13 C 0.13 2.25 7.29 -38.94 -0.28 1.97 15 14 F -0.13 -2.27 15.55 2.25 0.04 -2.24 15 15 C -0.17 -3.00 5.88 -104.93 -0.62 -3.62 15 16 C 0.53 8.76 8.27 34.53 0.29 9.04 15 17 O -0.51 -9.58 16.13 -19.26 -0.31 -9.89 15 18 O -0.51 -6.63 12.68 -40.57 -0.51 -7.14 15 19 C -0.04 -0.67 9.26 -39.18 -0.36 -1.03 15 20 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 21 H 0.03 0.84 8.08 -51.93 -0.42 0.42 15 22 H 0.03 0.83 8.08 -51.93 -0.42 0.41 15 23 H 0.14 2.11 8.06 -52.49 -0.42 1.69 15 24 H 0.14 1.70 8.06 -52.49 -0.42 1.27 15 25 H 0.41 3.18 9.11 45.56 0.42 3.59 15 26 H 0.14 2.53 7.61 -52.48 -0.40 2.13 15 LS Contribution 248.66 15.07 3.75 3.75 Total: -1.00 -30.33 248.66 -5.38 -35.72 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -1.21 Total: -0.57 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.85 Total: -10.93 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.74 Total: -24.25 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.83 Total: -17.03 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.33 -5.38 -35.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306904601.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.135 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds