Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38480 * 119.88300 * 269.72201 * 10 9 7 12 12 C 1.38206 * 120.34421 * 179.72397 * 11 10 9 13 13 C 1.38308 * 120.12410 * 0.55401 * 12 11 10 14 14 F 1.35105 * 120.11189 * 179.70327 * 13 12 11 15 15 C 1.39883 * 119.77647 * 359.72394 * 13 12 11 16 16 C 1.47554 * 120.17558 * 179.97438 * 15 13 12 17 17 O 1.21487 * 119.99924 * 0.02562 * 16 15 13 18 18 O 1.34730 * 120.00250 * 180.02562 * 16 15 13 19 19 C 1.37826 * 119.89008 * 90.00255 * 10 9 7 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08001 * 119.82606 * 0.02562 * 11 10 9 24 24 H 1.08001 * 119.93659 * 180.25574 * 12 11 10 25 25 H 0.96696 * 117.00172 * 179.97438 * 18 16 15 26 26 H 1.08008 * 120.06194 * 359.96747 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6742 -4.1675 -1.2133 12 6 3.5766 -5.2142 -1.2291 13 6 4.0338 -5.7544 -0.0408 14 9 4.9114 -6.7815 -0.0565 15 6 3.5843 -5.2340 1.1773 16 6 4.0659 -5.8040 2.4503 17 8 4.8553 -6.7274 2.4422 18 8 3.6302 -5.3004 3.6215 19 6 2.6764 -4.1721 1.1823 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.3172 -3.7520 -2.1441 24 1 3.9217 -5.6142 -2.1711 25 1 3.9735 -5.7068 4.4290 26 1 2.3252 -3.7648 2.1190 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306904601.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = -143.385664 kcal Electronic energy + Delta-G solvation = -14517.909827 eV Core-core repulsion = 11667.733847 eV Total energy + Delta-G solvation = -2850.175980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.96404 -41.34479 -39.77145 -37.13621 -35.39896 -32.97876 -32.52740 -28.79117 -25.83962 -25.16682 -23.44249 -21.52229 -19.16303 -18.77534 -18.45751 -17.69519 -17.22205 -17.05239 -16.55314 -16.24945 -15.34860 -15.03453 -14.49296 -14.42496 -14.29671 -13.60449 -13.19695 -13.02765 -12.66596 -12.61601 -12.52862 -12.37051 -11.72691 -11.50308 -11.47788 -10.57826 -10.20672 -9.51813 -8.18384 -6.30150 -0.46646 0.22181 1.42265 1.42937 1.46303 1.56775 1.96369 2.41137 2.66450 3.10507 3.14635 3.65653 3.96419 4.05039 4.24880 4.41127 4.76104 4.95969 5.02921 5.17455 5.24633 5.39470 5.47882 5.76987 5.79584 5.85017 6.18195 6.82841 6.91120 7.38945 8.91140 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.035009 B = 0.007107 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.593600 B = 3938.871002 C = 4294.595506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.056 3.944 10 C -0.080 4.080 11 C -0.052 4.052 12 C -0.149 4.149 13 C 0.126 3.874 14 F -0.131 7.131 15 C -0.180 4.180 16 C 0.536 3.464 17 O -0.539 6.539 18 O -0.500 6.500 19 C -0.037 4.037 20 H 0.265 0.735 21 H 0.012 0.988 22 H 0.019 0.981 23 H 0.153 0.847 24 H 0.174 0.826 25 H 0.434 0.566 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -8.554 1.227 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.080 4.080 11 C -0.070 4.070 12 C -0.167 4.167 13 C 0.107 3.893 14 F -0.109 7.109 15 C -0.182 4.182 16 C 0.382 3.618 17 O -0.431 6.431 18 O -0.314 6.314 19 C -0.055 4.055 20 H 0.074 0.926 21 H 0.031 0.969 22 H 0.037 0.963 23 H 0.170 0.830 24 H 0.192 0.808 25 H 0.297 0.703 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.741 -8.554 0.897 10.341 hybrid contribution 0.490 0.519 0.677 0.983 sum 6.231 -8.035 1.573 10.289 Atomic orbital electron populations 1.70062 1.07502 1.27856 1.51242 1.25804 0.95633 1.02755 0.94676 0.85481 0.79031 0.79289 0.77760 1.19020 1.20367 1.20588 1.21418 0.93226 0.91095 1.50942 0.92465 1.18145 0.92647 0.90096 0.97209 1.20514 0.98206 0.96213 0.93056 1.21445 0.93588 0.93033 0.98888 1.21315 0.99731 0.98405 0.97292 1.17801 0.90826 0.87106 0.93595 1.91529 1.66090 1.55974 1.97303 1.19163 1.06145 1.02961 0.89925 1.20555 0.77198 0.79248 0.84781 1.90895 1.34300 1.29348 1.88586 1.84566 1.68059 1.61848 1.16882 1.21247 0.92828 0.91859 0.99585 0.92589 0.96923 0.96251 0.82957 0.80834 0.70335 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.56 13.29 21.45 0.28 -52.27 15 2 C 0.01 0.54 5.46 84.66 0.46 1.00 15 3 Si 0.96 41.98 29.54 68.60 2.03 44.01 15 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 7 C -0.53 -27.69 9.09 25.60 0.23 -27.45 15 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 15 9 C 0.06 2.66 5.10 29.10 0.15 2.81 15 10 C -0.08 -3.06 5.06 -19.90 -0.10 -3.16 15 11 C -0.05 -1.64 9.69 22.32 0.22 -1.43 15 12 C -0.15 -4.15 10.01 22.28 0.22 -3.92 15 13 C 0.13 4.06 7.29 22.68 0.17 4.22 15 14 F -0.13 -4.37 15.55 44.97 0.70 -3.67 15 15 C -0.18 -6.04 5.88 -20.06 -0.12 -6.16 15 16 C 0.54 16.94 8.27 70.28 0.58 17.52 15 17 O -0.54 -19.30 16.13 19.88 0.32 -18.98 15 18 O -0.50 -12.18 12.68 -56.40 -0.72 -12.89 15 19 C -0.04 -1.32 9.26 22.53 0.21 -1.11 15 20 H 0.27 14.17 8.31 -92.70 -0.77 13.40 15 21 H 0.01 0.64 8.08 -2.38 -0.02 0.62 15 22 H 0.02 0.96 8.08 -2.39 -0.02 0.94 15 23 H 0.15 4.36 8.06 -2.91 -0.02 4.34 15 24 H 0.17 3.54 8.06 -2.91 -0.02 3.52 15 25 H 0.43 5.75 9.11 -74.06 -0.67 5.08 15 26 H 0.14 5.02 7.61 -2.91 -0.02 5.00 15 Total: -1.00 -63.95 248.66 5.18 -58.77 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 0.55 Total: 2.70 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 2.02 Total: -17.67 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.28 Total: -52.27 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.39 Total: -31.87 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.70 Total: -3.67 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -63.95 5.18 -58.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306904601.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.617 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds