Wall clock time and date at job start Sun Mar 29 2020 21:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38474 * 119.82031 * 269.72165 * 10 9 7 12 12 C 1.37834 * 120.22092 * 179.76659 * 11 10 9 13 13 C 1.39718 * 119.87245 * 0.49034 * 12 11 10 14 14 C 1.47565 * 120.16939 * 179.74640 * 13 12 11 15 15 O 1.21491 * 120.00030 * 180.02562 * 14 13 12 16 16 O 1.34735 * 120.00318 * 0.02562 * 14 13 12 17 17 C 1.39876 * 119.65798 * 359.76523 * 13 12 11 18 18 F 1.35098 * 120.11523 * 179.97438 * 17 13 12 19 19 C 1.38198 * 119.82501 * 89.99902 * 10 9 7 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08001 * 119.88922 * 0.02562 * 11 10 9 24 24 H 1.08005 * 120.06204 * 180.22671 * 12 11 10 25 25 H 0.96696 * 116.99952 * 180.02562 * 16 14 13 26 26 H 1.08005 * 119.93963 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2438 -3.2598 1.2143 12 6 4.6986 -4.5609 1.2285 13 6 4.9380 -5.2276 0.0242 14 6 5.4303 -6.6187 0.0317 15 8 5.6379 -7.1953 -1.0173 16 8 5.6496 -7.2494 1.2019 17 6 4.7090 -4.5694 -1.1887 18 9 4.9379 -5.2050 -2.3586 19 6 4.2479 -3.2654 -1.1860 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.0622 -2.7430 2.1451 24 1 4.8736 -5.0627 2.1687 25 1 5.9723 -8.1598 1.1562 26 1 4.0701 -2.7546 -2.1209 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306981756.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:23 Heat of formation + Delta-G solvation = -141.719023 kcal Electronic energy + Delta-G solvation = -14471.871547 eV Core-core repulsion = 11621.767838 eV Total energy + Delta-G solvation = -2850.103709 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.03422 -41.31694 -39.81025 -37.09361 -35.45406 -33.56947 -31.66105 -30.04495 -26.04944 -24.03836 -23.37969 -21.92534 -19.19407 -18.98098 -18.58650 -17.75246 -17.22959 -17.07328 -16.35642 -16.26178 -15.59128 -15.20798 -14.72535 -14.41330 -14.16151 -13.72760 -13.41971 -13.13172 -12.67348 -12.61302 -12.30480 -12.12087 -11.86952 -11.65955 -11.52694 -10.78087 -9.98960 -9.73439 -8.28852 -6.35846 -0.45156 0.18601 1.42168 1.42945 1.45312 1.54124 1.95475 2.37290 2.60993 3.03537 3.08773 3.63143 3.91953 4.03392 4.29028 4.32218 4.77313 4.84378 4.96765 5.04726 5.11828 5.20030 5.51132 5.52665 5.69653 5.78387 6.22721 6.71212 6.93111 7.28136 8.87271 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.049982 B = 0.006451 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.067893 B = 4339.661958 C = 4530.395581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.031 0.969 9 C 0.012 3.988 10 C 0.015 3.985 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.201 4.201 14 C 0.539 3.461 15 O -0.546 6.546 16 O -0.495 6.495 17 C 0.147 3.853 18 F -0.133 7.133 19 C -0.177 4.177 20 H 0.268 0.732 21 H 0.039 0.961 22 H 0.053 0.947 23 H 0.155 0.845 24 H 0.178 0.822 25 H 0.435 0.565 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 -7.964 4.381 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.562 4.562 8 H 0.050 0.950 9 C -0.025 4.025 10 C 0.015 3.985 11 C -0.163 4.163 12 C -0.032 4.032 13 C -0.203 4.203 14 C 0.385 3.615 15 O -0.438 6.438 16 O -0.309 6.309 17 C 0.127 3.873 18 F -0.111 7.111 19 C -0.196 4.196 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.173 0.827 24 H 0.196 0.804 25 H 0.297 0.703 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.491 -7.661 4.092 15.214 hybrid contribution -0.168 -0.018 -0.688 0.709 sum 12.323 -7.679 3.403 14.913 Atomic orbital electron populations 1.70050 1.08470 1.28390 1.51857 1.25963 0.95532 1.03420 0.93799 0.85674 0.79878 0.78002 0.79236 1.19460 1.21246 1.15821 1.21071 0.90412 0.93239 1.51494 0.95025 1.18856 0.94500 0.89947 0.99241 1.20383 0.88477 0.97104 0.92524 1.21417 1.00965 0.95212 0.98662 1.21580 0.91384 0.93142 0.97143 1.19132 1.14010 0.93186 0.93996 1.20470 0.73346 0.86349 0.81360 1.90918 1.50490 1.67945 1.34486 1.84490 1.78867 1.34964 1.32543 1.17840 0.98099 0.90919 0.80438 1.91520 1.91697 1.81869 1.46027 1.21083 1.04702 0.93112 1.00712 0.92308 0.94251 0.92865 0.82706 0.80419 0.70264 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.11 13.96 21.45 0.30 -56.81 15 2 C 0.01 0.57 5.47 84.66 0.46 1.04 15 3 Si 0.95 40.80 27.47 68.60 1.88 42.68 15 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 5 H -0.29 -12.30 7.11 99.48 0.71 -11.60 15 6 H -0.24 -8.96 6.54 99.48 0.65 -8.31 15 7 C -0.52 -28.16 9.65 25.60 0.25 -27.91 15 8 H 0.03 1.92 7.98 -2.91 -0.02 1.90 15 9 C 0.01 0.49 4.16 29.10 0.12 0.61 15 10 C 0.02 0.57 5.07 -19.82 -0.10 0.47 15 11 C -0.14 -4.37 9.67 22.23 0.22 -4.16 15 12 C -0.01 -0.38 9.61 22.53 0.22 -0.17 15 13 C -0.20 -6.13 5.88 -20.06 -0.12 -6.25 15 14 C 0.54 15.11 8.27 70.28 0.58 15.69 15 15 O -0.55 -18.91 16.13 19.86 0.32 -18.59 15 16 O -0.49 -8.96 12.68 -56.45 -0.72 -9.67 15 17 C 0.15 5.14 7.29 22.69 0.17 5.30 15 18 F -0.13 -4.96 15.55 44.97 0.70 -4.26 15 19 C -0.18 -6.40 9.66 22.28 0.22 -6.18 15 20 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 21 H 0.04 1.59 7.51 -2.38 -0.02 1.57 15 22 H 0.05 2.07 7.13 -2.39 -0.02 2.06 15 23 H 0.16 4.10 8.06 -2.91 -0.02 4.07 15 24 H 0.18 3.28 7.61 -2.91 -0.02 3.25 15 25 H 0.43 3.56 9.11 -74.06 -0.67 2.89 15 26 H 0.14 4.98 8.06 -2.91 -0.02 4.96 15 Total: -1.00 -68.70 245.05 4.99 -63.71 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.49 Total: 4.50 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 2.01 Total: -21.56 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.30 Total: -56.81 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.40 Total: -28.26 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.70 Total: -4.26 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.88 Total: 42.68 kcal Total: -68.70 4.99 -63.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306981756.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.007 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds