Wall clock time and date at job start Sun Mar 29 2020 21:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.73022 * 2 1 4 4 C 1.54939 * 110.66503 * 236.90319 * 2 1 3 5 5 H 1.09000 * 110.72249 * 322.50915 * 4 2 1 6 6 C 1.52997 * 110.72518 * 85.79438 * 4 2 1 7 7 C 1.54600 * 102.92040 * 204.15414 * 4 2 1 8 8 C 1.53993 * 105.14104 * 21.95410 * 7 4 2 9 9 N 1.47909 * 107.05865 * 1.23102 * 8 7 4 10 10 C 1.46897 * 110.99923 * 214.15782 * 9 8 7 11 11 C 1.52991 * 109.47606 * 77.95453 * 10 9 8 12 12 C 1.50699 * 115.55448 * 70.20590 * 11 10 9 13 13 H 1.08007 * 119.99687 * 3.98090 * 12 11 10 14 14 C 1.37872 * 120.00630 * 183.97899 * 12 11 10 15 15 N 1.31518 * 119.99507 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00280 * 179.72681 * 14 12 11 17 17 H 1.48507 * 109.47030 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47354 * 119.99553 * 16 14 12 19 19 H 1.48497 * 109.47219 * 239.99783 * 16 14 12 20 20 C 1.53006 * 117.50025 * 215.87977 * 11 10 9 21 21 C 1.53000 * 117.50030 * 284.53702 * 11 10 9 22 22 H 1.08996 * 109.47145 * 298.35792 * 1 2 3 23 23 H 1.08997 * 109.47023 * 58.35582 * 1 2 3 24 24 H 1.08998 * 109.47581 * 178.35693 * 1 2 3 25 25 H 1.08997 * 109.46973 * 174.95298 * 6 4 2 26 26 H 1.08997 * 109.47320 * 294.95755 * 6 4 2 27 27 H 1.09007 * 109.46870 * 54.95756 * 6 4 2 28 28 H 1.08999 * 110.30959 * 263.04533 * 7 4 2 29 29 H 1.08995 * 110.39276 * 140.91596 * 7 4 2 30 30 H 1.09000 * 109.92194 * 241.87614 * 8 7 4 31 31 H 1.08999 * 110.08069 * 120.67125 * 8 7 4 32 32 H 1.09007 * 109.46871 * 317.95287 * 10 9 8 33 33 H 1.08996 * 109.47007 * 197.95706 * 10 9 8 34 34 H 0.97001 * 119.99388 * 179.97438 * 15 14 12 35 35 H 1.09001 * 117.50007 * 214.99999 * 20 11 10 36 36 H 1.09001 * 117.49939 * 0.02562 * 20 11 10 37 37 H 1.09004 * 117.49684 * 359.97438 * 21 11 10 38 38 H 1.08998 * 117.50518 * 144.99512 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2145 5 1 1.4560 -1.6644 -1.4171 6 6 2.1697 0.1071 -2.4492 7 6 3.4852 -1.2198 -0.7423 8 6 3.4279 -1.1648 0.7956 9 7 2.0542 -0.7589 1.1643 10 6 2.0580 0.0720 2.3757 11 6 2.4879 1.4956 2.0164 12 6 1.4936 2.2911 1.2104 13 1 0.5254 1.8711 0.9807 14 6 1.8197 3.5548 0.7662 15 7 2.9985 4.0664 1.0463 16 14 0.5901 4.5377 -0.2394 17 1 -0.6502 3.7413 -0.4207 18 1 0.2679 5.8017 0.4704 19 1 1.1750 4.8513 -1.5678 20 6 3.3397 2.2549 3.0357 21 6 3.9737 1.7370 1.7424 22 1 -0.3633 0.4881 0.9043 23 1 -0.3633 0.5391 -0.8749 24 1 -0.3634 -1.0272 -0.0295 25 1 2.6388 -0.4433 -3.2647 26 1 1.1687 0.4175 -2.7488 27 1 2.7678 0.9874 -2.2136 28 1 4.2374 -0.5260 -1.1177 29 1 3.7060 -2.2335 -1.0766 30 1 4.1440 -0.4323 1.1680 31 1 3.6498 -2.1466 1.2138 32 1 2.7561 -0.3463 3.1009 33 1 1.0565 0.0924 2.8054 34 1 3.2281 4.9554 0.7335 35 1 3.1808 3.3297 3.1234 36 1 3.5941 1.7400 3.9622 37 1 4.6449 0.8815 1.8185 38 1 4.2320 2.4710 0.9791 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307066848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:19 Heat of formation + Delta-G solvation = 30.380286 kcal Electronic energy + Delta-G solvation = -17010.636632 eV Core-core repulsion = 14660.840865 eV Total energy + Delta-G solvation = -2349.795767 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.82651 -37.71575 -34.26082 -33.07662 -32.33032 -29.07111 -27.82357 -25.73265 -24.93980 -22.80723 -21.57187 -21.10158 -19.78591 -18.14898 -16.95659 -16.49719 -15.79669 -15.60597 -15.27362 -14.65250 -14.32672 -13.82606 -13.73269 -13.38581 -13.11492 -12.99379 -12.88533 -12.58904 -12.44892 -12.12686 -11.95800 -11.79569 -11.72504 -11.58727 -11.37304 -11.16842 -10.98552 -10.56282 -10.32721 -10.02820 -8.84872 -7.95977 -5.99070 1.38327 1.44080 1.52483 2.42953 3.02007 3.45822 3.86874 3.96142 4.00780 4.22491 4.36452 4.52783 4.60124 4.75431 4.79406 4.84321 4.86618 4.90696 4.92571 4.99554 5.00676 5.07321 5.19677 5.25582 5.32588 5.33529 5.39775 5.47598 5.57559 5.59821 5.70668 5.86792 6.04411 6.22055 6.36355 6.45766 6.56999 6.93699 7.47227 8.95123 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.014294 C = 0.011273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.020706 B = 1958.383557 C = 2483.284468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.025 3.975 3 H 0.113 0.887 4 C -0.091 4.091 5 H 0.078 0.922 6 C -0.135 4.135 7 C -0.117 4.117 8 C 0.020 3.980 9 N -0.510 5.510 10 C 0.091 3.909 11 C -0.013 4.013 12 C -0.474 4.474 13 H 0.084 0.916 14 C 0.013 3.987 15 N -0.900 5.900 16 Si 0.938 3.062 17 H -0.260 1.260 18 H -0.290 1.290 19 H -0.285 1.285 20 C -0.195 4.195 21 C -0.182 4.182 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.253 0.747 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -8.299 -4.059 9.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 H 0.130 0.870 4 C -0.110 4.110 5 H 0.096 0.904 6 C -0.193 4.193 7 C -0.155 4.155 8 C -0.108 4.108 9 N -0.232 5.232 10 C -0.038 4.038 11 C -0.015 4.015 12 C -0.511 4.511 13 H 0.102 0.898 14 C -0.186 4.186 15 N -0.539 5.539 16 Si 0.765 3.235 17 H -0.184 1.184 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.234 4.234 21 C -0.220 4.220 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.345 -8.606 -3.971 9.573 hybrid contribution 0.268 1.818 -0.267 1.857 sum -1.077 -6.789 -4.239 8.075 Atomic orbital electron populations 1.21559 0.95241 1.00421 1.00524 1.23897 0.95466 1.00550 0.88328 0.87005 1.22090 0.96177 0.98025 0.94717 0.90406 1.21702 1.01512 0.98861 0.97222 1.22364 0.97030 1.01602 0.94545 1.23071 0.91181 1.00335 0.96213 1.65029 1.17980 1.36563 1.03646 1.21644 0.99825 0.89776 0.92535 1.19806 0.90047 0.93425 0.98192 1.21252 1.00917 0.98653 1.30312 0.89814 1.25619 0.96654 0.98532 0.97818 1.70172 1.21091 1.16207 1.46461 0.85781 0.80323 0.78885 0.78547 1.18379 1.21610 1.21107 1.22609 1.09383 1.00043 0.91332 1.22860 0.97692 1.00953 1.00496 0.93773 0.93105 0.92662 0.91199 0.92630 0.94642 0.92613 0.89959 0.93659 0.90619 0.92727 0.92062 0.93679 0.91089 0.92130 0.92151 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.40 71.98 0.60 -3.71 16 2 C 0.02 0.94 1.59 45.26 0.07 1.02 16 3 H 0.11 5.18 3.75 -2.56 -0.01 5.17 16 4 C -0.09 -2.91 3.10 -9.59 -0.03 -2.94 16 5 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 6 C -0.14 -4.09 9.15 71.98 0.66 -3.44 16 7 C -0.12 -3.60 6.51 31.47 0.20 -3.40 16 8 C 0.02 0.68 6.37 86.44 0.55 1.23 16 9 N -0.51 -19.30 5.23 -858.25 -4.49 -23.79 16 10 C 0.09 3.74 5.44 86.30 0.47 4.21 16 11 C -0.01 -0.62 1.45 -52.93 -0.08 -0.70 16 12 C -0.47 -23.91 5.92 25.60 0.15 -23.76 16 13 H 0.08 4.10 4.04 -2.91 -0.01 4.09 16 14 C 0.01 0.65 5.28 84.65 0.45 1.10 16 15 N -0.90 -49.37 8.61 21.45 0.18 -49.19 16 16 Si 0.94 41.92 29.54 68.60 2.03 43.94 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C -0.19 -9.57 9.35 30.62 0.29 -9.29 16 21 C -0.18 -8.83 8.41 30.62 0.26 -8.57 16 22 H 0.04 1.71 6.39 -2.39 -0.02 1.70 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.03 1.22 8.13 -2.38 -0.02 1.21 16 28 H 0.06 1.77 7.85 -2.39 -0.02 1.75 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.72 4.15 -2.39 -0.01 1.71 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 2.13 7.88 -2.38 -0.02 2.11 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 35 H 0.07 3.91 6.63 -2.39 -0.02 3.89 16 36 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.06 2.69 5.80 -2.39 -0.01 2.67 16 38 H 0.09 4.88 5.94 -2.39 -0.01 4.86 16 Total: -1.00 -53.84 277.69 2.35 -51.50 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 1.03 Total: 25.78 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 3.60 Total: -48.24 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -4.30 Total: -72.98 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -53.84 2.35 -51.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307066848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.878 kcal (2) G-P(sol) polarization free energy of solvation -53.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds