Wall clock time and date at job start Sun Mar 29 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46730 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99731 * 2 1 3 5 5 C 1.50707 * 109.46805 * 175.00095 * 4 2 1 6 6 H 1.07995 * 120.00359 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99613 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00380 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99695 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47185 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47241 * 120.00302 * 9 7 5 12 12 H 1.48508 * 109.47267 * 240.00171 * 9 7 5 13 13 S 1.80998 * 109.47015 * 119.99625 * 2 1 3 14 14 C 1.76199 * 100.00014 * 294.99975 * 13 2 1 15 15 N 1.32562 * 119.22501 * 179.97438 * 14 13 2 16 16 C 1.32258 * 120.73586 * 179.97438 * 15 14 13 17 17 C 1.38623 * 119.20439 * 0.02562 * 16 15 14 18 18 C 1.38620 * 118.56711 * 0.27702 * 17 16 15 19 19 N 1.32257 * 119.20416 * 359.46048 * 18 17 16 20 20 H 1.08996 * 109.47241 * 300.00230 * 1 2 3 21 21 H 1.08995 * 109.47160 * 60.00852 * 1 2 3 22 22 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47075 * 294.99366 * 4 2 1 24 24 H 1.09000 * 109.47672 * 54.99709 * 4 2 1 25 25 H 0.96992 * 120.00440 * 179.97438 * 8 7 5 26 26 H 1.08003 * 120.39706 * 180.02562 * 16 15 14 27 27 H 1.08002 * 120.71253 * 179.97438 * 17 16 15 28 28 H 1.08003 * 120.39837 * 179.70318 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2305 -1.1936 -2.3576 8 7 3.5766 -1.8380 -3.2994 9 14 6.0921 -1.0612 -2.4366 10 1 6.5836 -0.2908 -1.2662 11 1 6.6864 -2.4220 -2.4180 12 1 6.4863 -0.3660 -3.6883 13 16 2.1333 -0.8531 1.4779 14 6 1.5439 0.2424 2.7257 15 7 1.7867 -0.0359 3.9988 16 6 1.3587 0.7659 4.9596 17 6 0.6487 1.9075 4.6216 18 6 0.4069 2.1652 3.2812 19 7 0.8672 1.3252 2.3693 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.7517 -1.7716 -1.2054 24 1 1.6054 -0.2619 -2.1370 25 1 4.0609 -2.2447 -4.0347 26 1 1.5600 0.5340 5.9950 27 1 0.2874 2.5790 5.3865 28 1 -0.1474 3.0435 2.9849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308226981.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:01 Heat of formation + Delta-G solvation = 35.887562 kcal Electronic energy + Delta-G solvation = -12726.753296 eV Core-core repulsion = 10482.857113 eV Total energy + Delta-G solvation = -2243.896183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.54973 -34.67405 -33.49293 -32.17244 -31.68516 -27.45924 -24.42368 -24.33041 -23.29415 -20.58809 -18.06145 -17.23262 -16.35657 -15.77131 -15.06258 -14.68428 -14.55665 -14.09471 -13.53817 -12.84427 -12.51586 -11.81289 -11.65725 -11.32295 -10.89217 -10.80739 -10.64858 -10.47453 -10.30740 -9.98209 -9.52051 -9.42803 -9.12909 -9.03029 -8.39150 -7.14922 -6.03990 -4.06228 0.94828 1.23622 1.87419 2.94665 3.32073 3.39758 3.45461 3.84052 4.38220 4.45553 4.62850 4.85774 5.13969 5.22152 5.33517 5.78136 5.80429 5.90346 6.15580 6.34847 6.57889 6.64296 6.81421 7.08455 7.51255 7.57616 7.93253 8.09225 8.29848 8.98981 9.58328 11.07092 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.043808 B = 0.007119 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.001685 B = 3931.928398 C = 4248.755719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 H 0.090 0.910 4 C 0.036 3.964 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.284 1.284 13 S 0.036 5.964 14 C 0.291 3.709 15 N -0.512 5.512 16 C 0.159 3.841 17 C -0.259 4.259 18 C 0.158 3.842 19 N -0.521 5.521 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.261 0.739 26 H 0.165 0.835 27 H 0.141 0.859 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 6.619 13.111 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 H 0.108 0.892 4 C -0.003 4.003 5 C -0.561 4.561 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.210 1.210 13 S 0.276 5.724 14 C -0.082 4.082 15 N -0.229 5.229 16 C -0.012 4.012 17 C -0.287 4.287 18 C -0.012 4.012 19 N -0.239 5.239 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.182 0.818 27 H 0.159 0.841 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.676 4.773 12.203 14.280 hybrid contribution -0.018 1.916 0.555 1.995 sum -5.693 6.689 12.758 15.490 Atomic orbital electron populations 1.22112 0.94418 1.01640 1.02190 1.23660 0.97494 1.02785 0.95457 0.89162 1.19108 0.96481 0.95650 0.89069 1.21303 0.91538 1.34748 1.08480 0.91873 1.24986 0.98549 0.95068 0.95532 1.69960 1.35584 1.35706 1.12022 0.86527 0.85643 0.77901 0.77983 1.19532 1.20917 1.21040 1.86441 1.64947 1.26864 0.94175 1.25919 0.92687 0.94488 0.95093 1.68628 1.22184 1.32084 1.00030 1.23195 0.89684 0.89212 0.99074 1.22652 1.05808 1.01495 0.98747 1.23207 0.92302 0.96284 0.89357 1.68991 1.12560 1.04407 1.37942 0.91804 0.92219 0.92898 0.95520 0.94308 0.92932 0.81778 0.84107 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.96 37.16 0.33 -2.29 15 2 C -0.06 -1.37 2.14 -26.73 -0.06 -1.42 15 3 H 0.09 1.97 7.95 -51.92 -0.41 1.55 15 4 C 0.04 0.90 4.44 -27.88 -0.12 0.78 15 5 C -0.52 -14.50 8.53 -34.43 -0.29 -14.79 15 6 H 0.06 1.75 7.60 -52.49 -0.40 1.35 15 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 8 N -0.89 -26.44 13.29 55.43 0.74 -25.70 15 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 15 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 13 S 0.04 0.75 21.00 -107.50 -2.26 -1.51 15 14 C 0.29 5.38 7.65 -90.83 -0.70 4.69 15 15 N -0.51 -8.72 10.40 -13.44 -0.14 -8.86 15 16 C 0.16 1.98 11.30 -17.23 -0.19 1.78 15 17 C -0.26 -2.77 10.16 -39.30 -0.40 -3.17 15 18 C 0.16 1.99 11.30 -17.23 -0.19 1.80 15 19 N -0.52 -8.75 6.85 -13.44 -0.09 -8.84 15 20 H 0.06 1.10 5.63 -51.93 -0.29 0.81 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.04 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 26 H 0.17 1.40 8.06 -52.48 -0.42 0.98 15 27 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15 28 H 0.16 1.46 8.06 -52.48 -0.42 1.03 15 LS Contribution 258.58 15.07 3.90 3.90 Total: -1.00 -31.30 258.58 -7.80 -39.10 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -3.20 Total: -3.79 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.72 Total: -11.02 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.50 Total: -43.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.26 Total: -1.51 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.30 -7.80 -39.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308226981.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.986 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds