Wall clock time and date at job start Sun Mar 29 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46730 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99731 * 2 1 3 5 5 C 1.50707 * 109.46805 * 175.00095 * 4 2 1 6 6 H 1.07995 * 120.00359 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99613 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00380 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99695 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47185 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47241 * 120.00302 * 9 7 5 12 12 H 1.48508 * 109.47267 * 240.00171 * 9 7 5 13 13 S 1.80998 * 109.47015 * 119.99625 * 2 1 3 14 14 C 1.76199 * 100.00014 * 294.99975 * 13 2 1 15 15 N 1.32562 * 119.22501 * 179.97438 * 14 13 2 16 16 C 1.32258 * 120.73586 * 179.97438 * 15 14 13 17 17 C 1.38623 * 119.20439 * 0.02562 * 16 15 14 18 18 C 1.38620 * 118.56711 * 0.27702 * 17 16 15 19 19 N 1.32257 * 119.20416 * 359.46048 * 18 17 16 20 20 H 1.08996 * 109.47241 * 300.00230 * 1 2 3 21 21 H 1.08995 * 109.47160 * 60.00852 * 1 2 3 22 22 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47075 * 294.99366 * 4 2 1 24 24 H 1.09000 * 109.47672 * 54.99709 * 4 2 1 25 25 H 0.96992 * 120.00440 * 179.97438 * 8 7 5 26 26 H 1.08003 * 120.39706 * 180.02562 * 16 15 14 27 27 H 1.08002 * 120.71253 * 179.97438 * 17 16 15 28 28 H 1.08003 * 120.39837 * 179.70318 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2305 -1.1936 -2.3576 8 7 3.5766 -1.8380 -3.2994 9 14 6.0921 -1.0612 -2.4366 10 1 6.5836 -0.2908 -1.2662 11 1 6.6864 -2.4220 -2.4180 12 1 6.4863 -0.3660 -3.6883 13 16 2.1333 -0.8531 1.4779 14 6 1.5439 0.2424 2.7257 15 7 1.7867 -0.0359 3.9988 16 6 1.3587 0.7659 4.9596 17 6 0.6487 1.9075 4.6216 18 6 0.4069 2.1652 3.2812 19 7 0.8672 1.3252 2.3693 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.7517 -1.7716 -1.2054 24 1 1.6054 -0.2619 -2.1370 25 1 4.0609 -2.2447 -4.0347 26 1 1.5600 0.5340 5.9950 27 1 0.2874 2.5790 5.3865 28 1 -0.1474 3.0435 2.9849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308226981.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:01 Heat of formation + Delta-G solvation = 16.656020 kcal Electronic energy + Delta-G solvation = -12727.587238 eV Core-core repulsion = 10482.857113 eV Total energy + Delta-G solvation = -2244.730125 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.66724 -36.50795 -34.75994 -33.98475 -32.87924 -29.38423 -25.55513 -25.40488 -25.26431 -22.32502 -19.27384 -18.53878 -18.37345 -17.02307 -16.54950 -16.29592 -15.90128 -15.42500 -14.79607 -14.44565 -14.12148 -13.60019 -13.30857 -13.11730 -12.66451 -12.48715 -12.39141 -11.87800 -11.71898 -11.45670 -11.24125 -11.02496 -10.97430 -10.55751 -10.19036 -8.66226 -8.20803 -6.29724 -0.14257 0.22364 0.44745 1.38724 1.40106 1.41176 1.53613 2.41259 2.75054 3.13985 3.35569 3.67749 3.82475 4.13079 4.26960 4.30224 4.42679 4.58102 4.86949 4.92842 5.05052 5.23642 5.38168 5.45736 5.51061 5.76879 6.04729 6.17297 6.82210 6.96568 7.38386 8.91056 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.043808 B = 0.007119 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.001685 B = 3931.928398 C = 4248.755719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 H 0.080 0.920 4 C 0.043 3.957 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.276 1.276 13 S -0.025 6.025 14 C 0.277 3.723 15 N -0.539 5.539 16 C 0.145 3.855 17 C -0.224 4.224 18 C 0.143 3.857 19 N -0.543 5.543 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.002 0.998 24 H 0.020 0.980 25 H 0.264 0.736 26 H 0.205 0.795 27 H 0.193 0.807 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 8.557 15.477 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 H 0.098 0.902 4 C 0.004 3.996 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.201 1.201 13 S 0.213 5.787 14 C -0.098 4.098 15 N -0.257 5.257 16 C -0.023 4.023 17 C -0.250 4.250 18 C -0.025 4.025 19 N -0.261 5.261 20 H 0.096 0.904 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.021 0.979 24 H 0.038 0.962 25 H 0.073 0.927 26 H 0.222 0.778 27 H 0.210 0.790 28 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.079 6.750 14.607 17.201 hybrid contribution -0.005 1.454 0.057 1.455 sum -6.084 8.205 14.663 17.870 Atomic orbital electron populations 1.22023 0.92151 1.01865 1.03197 1.23287 0.99181 1.01174 0.93905 0.90169 1.18900 0.95536 0.94487 0.90638 1.21587 0.92874 1.34408 1.08274 0.92258 1.25834 1.03328 0.94763 0.95214 1.70069 1.37453 1.36694 1.12714 0.85499 0.79933 0.78055 0.78238 1.19041 1.20401 1.20127 1.86345 1.67512 1.29071 0.95796 1.25113 0.94872 0.95032 0.94773 1.68528 1.23161 1.33891 1.00112 1.23996 0.89256 0.89238 0.99824 1.23221 1.02201 1.00487 0.99052 1.23986 0.92067 0.96571 0.89889 1.68884 1.12862 1.04535 1.39852 0.90444 0.91365 0.93077 0.97940 0.96208 0.92683 0.77815 0.78984 0.78083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.96 71.98 0.64 -4.24 15 2 C -0.05 -2.01 2.14 30.59 0.07 -1.95 15 3 H 0.08 3.60 7.95 -2.40 -0.02 3.58 15 4 C 0.04 2.27 4.44 29.85 0.13 2.40 15 5 C -0.53 -30.55 8.53 25.60 0.22 -30.33 15 6 H 0.06 3.37 7.60 -2.91 -0.02 3.35 15 7 C 0.01 0.39 5.46 84.66 0.46 0.86 15 8 N -0.93 -56.36 13.29 21.45 0.28 -56.08 15 9 Si 0.96 45.25 29.54 68.60 2.03 47.28 15 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 13 S -0.02 -1.07 21.00 -56.49 -1.19 -2.26 15 14 C 0.28 10.13 7.65 180.42 1.38 11.51 15 15 N -0.54 -17.62 10.40 -196.43 -2.04 -19.67 15 16 C 0.14 3.07 11.30 84.72 0.96 4.03 15 17 C -0.22 -3.62 10.16 22.45 0.23 -3.39 15 18 C 0.14 3.04 11.30 84.72 0.96 3.99 15 19 N -0.54 -17.37 6.85 -196.44 -1.35 -18.71 15 20 H 0.08 2.62 5.63 -2.39 -0.01 2.60 15 21 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 24 H 0.02 1.10 8.14 -2.39 -0.02 1.08 15 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 15 26 H 0.21 2.50 8.06 -2.91 -0.02 2.48 15 27 H 0.19 1.18 8.06 -2.91 -0.02 1.16 15 28 H 0.20 2.59 8.06 -2.91 -0.02 2.57 15 Total: -1.00 -70.69 258.58 3.93 -66.75 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: 1.15 Total: -0.20 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 5.05 Total: -17.11 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -3.10 Total: -94.46 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -1.19 Total: -2.26 kcal Total: -70.69 3.93 -66.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308226981.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.410 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds