Wall clock time and date at job start Sun Mar 29 2020 22:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48496 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46956 * 299.99780 * 3 2 1 6 6 H 1.48506 * 109.47265 * 59.99255 * 3 2 1 7 7 C 1.37875 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00109 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.33948 * 124.19817 * 90.02471 * 10 9 7 12 12 O 1.21538 * 123.79564 * 359.97438 * 11 10 9 13 13 N 1.34879 * 112.41069 * 179.97438 * 11 10 9 14 14 C 1.46293 * 106.11033 * 0.02562 * 13 11 10 15 15 C 1.52774 * 116.11331 * 129.21179 * 14 13 11 16 16 C 1.53962 * 86.87563 * 93.51230 * 15 14 13 17 17 C 1.52964 * 116.12747 * 230.65274 * 14 13 11 18 18 C 1.35102 * 124.20109 * 270.03311 * 10 9 7 19 19 O 1.21233 * 127.41367 * 0.02562 * 18 10 9 20 20 H 0.97002 * 119.99809 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46848 * 60.00110 * 9 7 2 22 22 H 1.08993 * 109.47614 * 300.00085 * 9 7 2 23 23 H 0.96997 * 126.94288 * 179.97438 * 13 11 10 24 24 H 1.09002 * 113.66470 * 338.99538 * 15 14 13 25 25 H 1.08998 * 113.66557 * 208.02945 * 15 14 13 26 26 H 1.09003 * 113.58845 * 139.22325 * 16 15 14 27 27 H 1.08995 * 113.58540 * 270.03236 * 16 15 14 28 28 H 1.09002 * 113.57792 * 152.02788 * 17 14 13 29 29 H 1.09002 * 113.80575 * 21.00415 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6919 -4.1853 1.1084 12 8 2.3959 -3.8392 2.2352 13 7 3.5495 -5.1892 0.8329 14 6 3.6218 -5.2724 -0.6259 15 6 5.0249 -5.2780 -1.2304 16 6 4.9428 -6.8150 -1.1945 17 6 3.4114 -6.6608 -1.2326 18 6 2.6970 -4.1895 -1.1169 19 8 2.4493 -3.8982 -2.2673 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 4.0232 -5.7433 1.4727 24 1 5.7874 -4.8650 -0.5700 25 1 5.0686 -4.8657 -2.2384 26 1 5.3550 -7.2947 -2.0823 27 1 5.3143 -7.2500 -0.2667 28 1 2.9989 -6.6378 -2.2413 29 1 2.8854 -7.3531 -0.5752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334437219.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:23 Heat of formation + Delta-G solvation = -49.386824 kcal Electronic energy + Delta-G solvation = -15618.656894 eV Core-core repulsion = 12928.310066 eV Total energy + Delta-G solvation = -2690.346829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.52397 -39.82070 -39.01804 -36.81861 -35.41523 -33.93196 -29.93780 -27.26749 -26.84936 -25.39320 -23.81228 -21.58420 -20.80372 -19.00346 -18.81381 -17.54271 -17.35436 -16.92659 -16.75572 -16.07023 -15.65092 -15.16683 -15.14385 -14.59209 -13.87279 -13.73118 -13.33834 -13.13865 -12.74672 -12.70755 -12.43783 -11.98109 -11.96151 -11.69897 -11.62726 -10.90577 -10.72175 -10.62633 -10.34115 -8.35679 -6.51068 0.59928 1.33642 1.36699 1.40682 1.51138 2.05975 2.27873 2.35276 2.94187 2.98516 3.40496 3.52743 3.80472 4.17453 4.42172 4.63182 4.72995 4.74762 4.93900 4.95544 4.98305 5.02879 5.13453 5.42249 5.53833 5.81037 5.86479 6.30051 6.46898 6.57611 7.13583 7.25226 8.74636 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.039690 B = 0.008336 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.293319 B = 3358.203791 C = 3525.989134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.262 3.738 10 N -0.576 5.576 11 C 0.697 3.303 12 O -0.584 6.584 13 N -0.683 5.683 14 C 0.080 3.920 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.118 4.118 18 C 0.521 3.479 19 O -0.504 6.504 20 H 0.273 0.727 21 H 0.029 0.971 22 H 0.025 0.975 23 H 0.452 0.548 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.268 -14.539 -2.467 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.071 0.929 9 C 0.142 3.858 10 N -0.320 5.320 11 C 0.398 3.602 12 O -0.460 6.460 13 N -0.349 5.349 14 C -0.012 4.012 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.156 4.156 18 C 0.310 3.690 19 O -0.376 6.376 20 H 0.082 0.918 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.300 0.700 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.730 -14.006 -2.493 17.819 hybrid contribution -0.162 1.116 0.425 1.205 sum 10.567 -12.890 -2.067 16.796 Atomic orbital electron populations 1.70038 1.07566 1.28741 1.49695 1.25892 0.95970 1.03252 0.93597 0.85229 0.78545 0.77806 0.78404 1.19196 1.19357 1.19606 1.21517 0.93216 0.91477 1.53311 0.92888 1.19020 0.87173 0.82305 0.97281 1.46940 1.43125 1.33593 1.08293 1.16198 0.79793 0.80407 0.83787 1.90917 1.64945 1.68016 1.22169 1.44867 1.47327 1.36002 1.06662 1.22245 0.99527 0.97520 0.81872 1.23172 0.91035 1.00024 1.02015 1.22898 0.93224 0.93277 1.05245 1.23193 1.00166 0.90135 1.02114 1.21307 0.80441 0.82842 0.84429 1.90680 1.61293 1.66726 1.18930 0.91832 0.95321 0.95668 0.70015 0.88947 0.88231 0.87951 0.87332 0.87962 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.31 13.29 21.45 0.28 -56.02 15 2 C 0.01 0.77 5.46 84.65 0.46 1.24 15 3 Si 0.98 45.63 29.54 68.60 2.03 47.66 15 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 7 C -0.56 -33.62 9.39 25.60 0.24 -33.38 15 8 H 0.05 3.18 7.81 -2.91 -0.02 3.16 15 9 C 0.26 15.03 5.47 85.63 0.47 15.50 15 10 N -0.58 -27.26 2.60 -777.38 -2.02 -29.29 15 11 C 0.70 29.66 8.63 179.28 1.55 31.21 15 12 O -0.58 -29.40 17.49 -3.83 -0.07 -29.47 15 13 N -0.68 -19.07 6.35 -442.95 -2.81 -21.88 15 14 C 0.08 2.13 1.50 2.78 0.00 2.13 15 15 C -0.12 -2.39 7.60 30.84 0.23 -2.15 15 16 C -0.11 -1.26 8.09 31.24 0.25 -1.01 15 17 C -0.12 -2.08 7.62 30.91 0.24 -1.84 15 18 C 0.52 21.22 7.57 87.58 0.66 21.88 15 19 O -0.50 -23.15 17.79 -2.88 -0.05 -23.20 15 20 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 21 H 0.03 1.74 8.02 -2.39 -0.02 1.72 15 22 H 0.03 1.56 7.87 -2.39 -0.02 1.54 15 23 H 0.45 8.82 8.96 -92.71 -0.83 7.99 15 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.10 0.82 8.14 -2.39 -0.02 0.81 15 27 H 0.11 0.80 8.14 -2.39 -0.02 0.79 15 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 29 H 0.10 1.47 8.14 -2.39 -0.02 1.46 15 Total: -1.00 -76.96 259.52 1.81 -75.15 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 0.34 Total: 3.46 kcal Atomic # 6 Polarization: 29.47 SS G_CDS: 4.11 Total: 33.58 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.55 Total: -107.19 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.12 Total: -52.67 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -76.96 1.81 -75.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334437219.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.766 kcal (2) G-P(sol) polarization free energy of solvation -76.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds