Wall clock time and date at job start Sun Mar 29 2020 21:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08996 * 115.56536 * 2 1 4 4 C 1.53008 * 117.50119 * 145.68915 * 2 1 3 5 5 C 1.53000 * 59.99900 * 107.48887 * 4 2 1 6 6 H 1.08996 * 117.49704 * 252.48113 * 5 4 2 7 7 C 1.53006 * 117.49497 * 107.49228 * 5 4 2 8 8 N 1.46899 * 109.46860 * 116.39041 * 7 5 4 9 9 C 1.46849 * 111.00212 * 294.20639 * 8 7 5 10 10 C 1.53035 * 109.52654 * 174.16614 * 9 8 7 11 11 C 1.53118 * 109.28047 * 59.17664 * 10 9 8 12 12 C 1.50696 * 109.57251 * 182.40978 * 11 10 9 13 13 H 1.08010 * 119.99582 * 119.71996 * 12 11 10 14 14 C 1.37876 * 120.00410 * 299.71626 * 12 11 10 15 15 N 1.31517 * 119.99845 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00269 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47097 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47400 * 119.99654 * 16 14 12 19 19 H 1.48501 * 109.47091 * 240.00292 * 16 14 12 20 20 C 1.53117 * 109.15985 * 302.34862 * 11 10 9 21 21 C 1.46848 * 110.99998 * 169.99871 * 8 7 5 22 22 H 1.09007 * 109.47305 * 205.68621 * 1 2 3 23 23 H 1.09002 * 109.47481 * 325.68774 * 1 2 3 24 24 H 1.09001 * 109.47294 * 85.69147 * 1 2 3 25 25 H 1.08998 * 117.49499 * 0.02562 * 4 2 1 26 26 H 1.08998 * 117.51868 * 214.97231 * 4 2 1 27 27 H 1.08996 * 109.46807 * 236.38629 * 7 5 4 28 28 H 1.09001 * 109.47367 * 356.38740 * 7 5 4 29 29 H 1.09007 * 109.46368 * 294.18375 * 9 8 7 30 30 H 1.08997 * 109.46266 * 54.14136 * 9 8 7 31 31 H 1.09003 * 109.49960 * 299.23631 * 10 9 8 32 32 H 1.09003 * 109.53440 * 179.14135 * 10 9 8 33 33 H 1.08999 * 109.51906 * 62.25032 * 11 10 9 34 34 H 0.96995 * 120.00025 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.50607 * 297.71162 * 20 11 10 36 36 H 1.08999 * 109.53547 * 177.61523 * 20 11 10 37 37 H 1.09001 * 109.46145 * 305.85840 * 21 8 7 38 38 H 1.09005 * 109.46325 * 65.82777 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8588 -1.2682 7 6 3.5490 -0.7759 -1.4714 8 7 4.0095 -1.9377 -2.2436 9 6 4.3668 -3.0516 -1.3559 10 6 4.7014 -4.2870 -2.1946 11 6 5.8684 -3.9616 -3.1310 12 6 6.1650 -5.1551 -4.0018 13 1 6.0904 -5.0716 -5.0761 14 6 6.5315 -6.3537 -3.4274 15 7 6.6229 -6.4552 -2.1193 16 14 6.8998 -7.8329 -4.5069 17 1 6.7276 -7.4595 -5.9339 18 1 8.2980 -8.2774 -4.2775 19 1 5.9672 -8.9377 -4.1678 20 6 5.4886 -2.7676 -4.0111 21 6 5.1312 -1.5761 -3.1197 22 1 -0.3634 -0.9262 0.4455 23 1 -0.3634 0.8488 0.5793 24 1 -0.3634 0.0772 -1.0248 25 1 1.6112 -1.8587 1.2679 26 1 3.1716 -0.8755 1.2683 27 1 3.3890 0.0669 -2.1438 28 1 4.3022 -0.5110 -0.7294 29 1 5.2337 -2.7742 -0.7559 30 1 3.5270 -3.2756 -0.6981 31 1 3.8305 -4.5732 -2.7844 32 1 4.9814 -5.1096 -1.5364 33 1 6.7505 -3.7130 -2.5408 34 1 6.8811 -7.2983 -1.7152 35 1 4.6301 -3.0298 -4.6295 36 1 6.3308 -2.5038 -4.6508 37 1 4.8466 -0.7285 -3.7431 38 1 5.9946 -1.3058 -2.5115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336499621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:36 Heat of formation + Delta-G solvation = 6.423266 kcal Electronic energy + Delta-G solvation = -15614.509047 eV Core-core repulsion = 13263.674426 eV Total energy + Delta-G solvation = -2350.834621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.73951 -37.13342 -33.70077 -31.32741 -29.72150 -28.79793 -26.58392 -24.37666 -22.07071 -21.58588 -20.77819 -19.92301 -18.50309 -16.35499 -15.50048 -15.01847 -14.46032 -14.28126 -13.80738 -13.34827 -13.09576 -12.95241 -12.46365 -12.27410 -12.19496 -11.81909 -11.37065 -11.33835 -11.09202 -10.93398 -10.70724 -10.41446 -10.15843 -9.95665 -9.83355 -9.59791 -9.34972 -8.90138 -8.63534 -8.25280 -7.68367 -5.93268 -3.98400 3.32897 3.40850 3.45167 3.81233 4.38165 4.48765 4.84143 4.95393 5.09648 5.27819 5.37018 5.56830 5.65636 5.73261 5.79203 5.82623 5.87861 5.91345 5.97366 6.01637 6.20430 6.26431 6.30966 6.39896 6.48199 6.68738 6.69505 6.91359 7.13932 7.23033 7.50872 7.68640 7.78192 7.89693 8.10497 8.21724 8.53261 9.05674 9.65838 11.12996 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049814 B = 0.005736 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.960390 B = 4880.366069 C = 5148.471747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.158 4.158 3 H 0.099 0.901 4 C -0.180 4.180 5 C -0.133 4.133 6 H 0.112 0.888 7 C 0.085 3.915 8 N -0.534 5.534 9 C 0.059 3.941 10 C -0.105 4.105 11 C 0.047 3.953 12 C -0.509 4.509 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.106 4.106 21 C 0.060 3.940 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.019 0.981 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.020 0.980 34 H 0.258 0.742 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 10.994 4.020 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 H 0.117 0.883 4 C -0.217 4.217 5 C -0.151 4.151 6 H 0.130 0.870 7 C -0.044 4.044 8 N -0.259 5.259 9 C -0.068 4.068 10 C -0.143 4.143 11 C 0.028 3.972 12 C -0.547 4.547 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.144 4.144 21 C -0.067 4.067 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.422 10.702 3.851 14.152 hybrid contribution 0.933 -0.582 0.094 1.103 sum -7.489 10.120 3.945 13.193 Atomic orbital electron populations 1.21333 0.93059 1.01601 1.01720 1.22362 0.95058 0.94551 1.05718 0.88303 1.23205 1.02292 1.01219 0.94935 1.22408 0.98763 1.00991 0.92981 0.87033 1.21623 0.93589 0.93603 0.95536 1.61978 1.36076 1.06336 1.21502 1.22256 0.97566 0.92489 0.94476 1.21661 0.98533 0.95207 0.98879 1.18692 0.93608 0.91697 0.93182 1.21263 1.45157 0.95259 0.93020 0.92716 1.24971 0.95494 0.98689 0.94903 1.69893 1.48636 1.25575 1.09092 0.86584 0.77792 0.83002 0.80901 1.19832 1.21172 1.21093 1.21673 0.99703 0.95194 0.97814 1.22106 0.90952 0.98459 0.95225 0.92634 0.92562 0.92241 0.89030 0.89217 0.91261 0.95545 0.96275 0.92369 0.93913 0.89059 0.96228 0.93206 0.92498 0.93257 0.92540 0.95973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.19 37.15 0.38 -0.77 16 2 C -0.16 -1.77 6.13 -90.62 -0.56 -2.32 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.18 -2.19 9.82 -26.73 -0.26 -2.45 16 5 C -0.13 -1.80 4.42 -90.62 -0.40 -2.20 16 6 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 7 C 0.08 1.28 5.24 -3.82 -0.02 1.26 16 8 N -0.53 -9.85 4.66 -234.66 -1.09 -10.94 16 9 C 0.06 1.21 5.31 -3.83 -0.02 1.19 16 10 C -0.10 -2.53 5.12 -26.65 -0.14 -2.67 16 11 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 12 C -0.51 -14.22 8.56 -34.44 -0.29 -14.51 16 13 H 0.05 1.52 7.75 -52.48 -0.41 1.11 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 15 N -0.89 -25.79 11.37 55.43 0.63 -25.16 16 16 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 21 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 22 H 0.05 0.53 7.90 -51.92 -0.41 0.12 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 26 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 27 H 0.07 0.97 7.99 -51.93 -0.41 0.55 16 28 H 0.03 0.40 7.86 -51.93 -0.41 -0.01 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.11 7.10 -51.93 -0.37 0.74 16 31 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -28.28 298.52 -9.69 -37.97 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.94 Total: -1.66 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.77 Total: -21.24 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.46 Total: -36.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.28 -9.69 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336499621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.396 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds