Wall clock time and date at job start Sun Mar 29 2020 21:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08996 * 115.56536 * 2 1 4 4 C 1.53008 * 117.50119 * 145.68915 * 2 1 3 5 5 C 1.53000 * 59.99900 * 107.48887 * 4 2 1 6 6 H 1.08996 * 117.49704 * 252.48113 * 5 4 2 7 7 C 1.53006 * 117.49497 * 107.49228 * 5 4 2 8 8 N 1.46899 * 109.46860 * 116.39041 * 7 5 4 9 9 C 1.46849 * 111.00212 * 294.20639 * 8 7 5 10 10 C 1.53035 * 109.52654 * 174.16614 * 9 8 7 11 11 C 1.53118 * 109.28047 * 59.17664 * 10 9 8 12 12 C 1.50696 * 109.57251 * 182.40978 * 11 10 9 13 13 H 1.08010 * 119.99582 * 119.71996 * 12 11 10 14 14 C 1.37876 * 120.00410 * 299.71626 * 12 11 10 15 15 N 1.31517 * 119.99845 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00269 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47097 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47400 * 119.99654 * 16 14 12 19 19 H 1.48501 * 109.47091 * 240.00292 * 16 14 12 20 20 C 1.53117 * 109.15985 * 302.34862 * 11 10 9 21 21 C 1.46848 * 110.99998 * 169.99871 * 8 7 5 22 22 H 1.09007 * 109.47305 * 205.68621 * 1 2 3 23 23 H 1.09002 * 109.47481 * 325.68774 * 1 2 3 24 24 H 1.09001 * 109.47294 * 85.69147 * 1 2 3 25 25 H 1.08998 * 117.49499 * 0.02562 * 4 2 1 26 26 H 1.08998 * 117.51868 * 214.97231 * 4 2 1 27 27 H 1.08996 * 109.46807 * 236.38629 * 7 5 4 28 28 H 1.09001 * 109.47367 * 356.38740 * 7 5 4 29 29 H 1.09007 * 109.46368 * 294.18375 * 9 8 7 30 30 H 1.08997 * 109.46266 * 54.14136 * 9 8 7 31 31 H 1.09003 * 109.49960 * 299.23631 * 10 9 8 32 32 H 1.09003 * 109.53440 * 179.14135 * 10 9 8 33 33 H 1.08999 * 109.51906 * 62.25032 * 11 10 9 34 34 H 0.96995 * 120.00025 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.50607 * 297.71162 * 20 11 10 36 36 H 1.08999 * 109.53547 * 177.61523 * 20 11 10 37 37 H 1.09001 * 109.46145 * 305.85840 * 21 8 7 38 38 H 1.09005 * 109.46325 * 65.82777 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8588 -1.2682 7 6 3.5490 -0.7759 -1.4714 8 7 4.0095 -1.9377 -2.2436 9 6 4.3668 -3.0516 -1.3559 10 6 4.7014 -4.2870 -2.1946 11 6 5.8684 -3.9616 -3.1310 12 6 6.1650 -5.1551 -4.0018 13 1 6.0904 -5.0716 -5.0761 14 6 6.5315 -6.3537 -3.4274 15 7 6.6229 -6.4552 -2.1193 16 14 6.8998 -7.8329 -4.5069 17 1 6.7276 -7.4595 -5.9339 18 1 8.2980 -8.2774 -4.2775 19 1 5.9672 -8.9377 -4.1678 20 6 5.4886 -2.7676 -4.0111 21 6 5.1312 -1.5761 -3.1197 22 1 -0.3634 -0.9262 0.4455 23 1 -0.3634 0.8488 0.5793 24 1 -0.3634 0.0772 -1.0248 25 1 1.6112 -1.8587 1.2679 26 1 3.1716 -0.8755 1.2683 27 1 3.3890 0.0669 -2.1438 28 1 4.3022 -0.5110 -0.7294 29 1 5.2337 -2.7742 -0.7559 30 1 3.5270 -3.2756 -0.6981 31 1 3.8305 -4.5732 -2.7844 32 1 4.9814 -5.1096 -1.5364 33 1 6.7505 -3.7130 -2.5408 34 1 6.8811 -7.2983 -1.7152 35 1 4.6301 -3.0298 -4.6295 36 1 6.3308 -2.5038 -4.6508 37 1 4.8466 -0.7285 -3.7431 38 1 5.9946 -1.3058 -2.5115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336499621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:35 Heat of formation + Delta-G solvation = -8.958028 kcal Electronic energy + Delta-G solvation = -15615.176030 eV Core-core repulsion = 13263.674426 eV Total energy + Delta-G solvation = -2351.501604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12012 -38.41480 -35.54886 -33.18210 -31.45940 -29.85630 -28.12912 -26.05108 -23.77610 -23.23360 -21.81154 -20.98352 -20.32568 -18.44531 -16.97449 -16.49200 -16.08735 -15.65689 -15.13862 -14.82834 -14.64145 -14.21110 -14.15050 -13.79914 -13.47935 -13.05386 -12.91960 -12.82051 -12.61971 -12.44883 -12.23583 -12.08053 -11.94258 -11.84688 -11.38554 -10.86235 -10.82119 -10.59098 -10.54061 -10.36549 -9.17676 -8.07809 -6.21397 1.40169 1.41819 1.53532 2.44143 2.81699 3.08663 3.19141 3.81496 3.99034 4.07605 4.27154 4.27841 4.36416 4.45194 4.50408 4.54444 4.70657 4.79351 4.85828 4.91998 4.93034 4.97868 4.99559 5.01498 5.10949 5.22661 5.23939 5.34712 5.34805 5.50702 5.57750 5.63744 6.00541 6.03534 6.31419 6.37857 6.41250 6.90594 7.46530 8.97155 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049814 B = 0.005736 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.960390 B = 4880.366069 C = 5148.471747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 H 0.111 0.889 4 C -0.183 4.183 5 C -0.152 4.152 6 H 0.097 0.903 7 C 0.088 3.912 8 N -0.541 5.541 9 C 0.075 3.925 10 C -0.096 4.096 11 C 0.042 3.958 12 C -0.533 4.533 13 H 0.051 0.949 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.954 3.046 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.100 4.100 21 C 0.065 3.935 22 H 0.053 0.947 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.060 0.940 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 12.272 3.800 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.156 4.156 3 H 0.129 0.871 4 C -0.220 4.220 5 C -0.170 4.170 6 H 0.115 0.885 7 C -0.039 4.039 8 N -0.265 5.265 9 C -0.053 4.053 10 C -0.134 4.134 11 C 0.024 3.976 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.137 4.137 21 C -0.063 4.063 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.369 11.997 3.629 15.648 hybrid contribution 1.224 -0.967 0.174 1.569 sum -8.145 11.030 3.803 14.229 Atomic orbital electron populations 1.21372 0.91850 1.02340 1.02227 1.22465 0.95936 0.94246 1.02919 0.87109 1.23263 1.02701 1.02112 0.93931 1.22289 0.98435 1.02672 0.93619 0.88486 1.21685 0.94094 0.92505 0.95666 1.61937 1.35660 1.07273 1.21676 1.21963 0.97581 0.91775 0.93970 1.21430 0.97391 0.96232 0.98353 1.18675 0.92721 0.92801 0.93417 1.21628 1.45616 0.96614 0.93223 0.93052 1.25759 0.95274 1.01486 0.96175 1.70031 1.49009 1.26284 1.10579 0.85561 0.77681 0.79410 0.79336 1.19157 1.20629 1.20587 1.21543 0.99612 0.94927 0.97658 1.22057 0.91163 0.97884 0.95164 0.92776 0.90849 0.92004 0.88684 0.89243 0.89494 0.95406 0.97311 0.91090 0.95173 0.92187 0.99526 0.93104 0.93006 0.92753 0.89275 0.96250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 10.19 71.98 0.73 -1.25 16 2 C -0.14 -2.69 6.13 -10.79 -0.07 -2.75 16 3 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.18 -4.12 9.82 30.60 0.30 -3.82 16 5 C -0.15 -3.83 4.42 -10.79 -0.05 -3.88 16 6 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 7 C 0.09 2.46 5.24 86.31 0.45 2.91 16 8 N -0.54 -19.26 4.66 -896.34 -4.17 -23.43 16 9 C 0.07 3.05 5.31 86.32 0.46 3.51 16 10 C -0.10 -4.77 5.12 30.65 0.16 -4.61 16 11 C 0.04 2.22 2.16 -11.46 -0.02 2.19 16 12 C -0.53 -30.39 8.56 25.60 0.22 -30.17 16 13 H 0.05 2.88 7.75 -2.91 -0.02 2.86 16 14 C 0.01 0.64 5.31 84.65 0.45 1.09 16 15 N -0.92 -54.41 11.37 21.45 0.24 -54.16 16 16 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 C -0.10 -4.28 5.32 30.65 0.16 -4.11 16 21 C 0.06 2.32 5.46 86.32 0.47 2.79 16 22 H 0.05 0.91 7.90 -2.38 -0.02 0.89 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 2.05 8.05 -2.39 -0.02 2.03 16 26 H 0.09 2.02 8.03 -2.39 -0.02 2.00 16 27 H 0.09 2.14 7.99 -2.39 -0.02 2.12 16 28 H 0.03 0.78 7.86 -2.39 -0.02 0.76 16 29 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.07 2.69 7.10 -2.39 -0.02 2.67 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 3.35 6.18 -2.39 -0.01 3.34 16 33 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.79 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 2.64 8.02 -2.39 -0.02 2.62 16 38 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -61.14 298.52 2.35 -58.79 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.99 Total: 10.29 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.27 Total: -38.11 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -3.93 Total: -77.59 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -61.14 2.35 -58.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336499621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.836 kcal (2) G-P(sol) polarization free energy of solvation -61.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds