Wall clock time and date at job start Sun Mar 29 2020 22:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35164 * 124.25885 * 269.72885 * 10 9 7 12 12 O 1.21231 * 127.34267 * 4.81095 * 11 10 9 13 13 C 1.50709 * 105.32839 * 184.72448 * 11 10 9 14 14 H 1.08999 * 112.92429 * 109.51229 * 13 11 10 15 15 C 1.54182 * 112.29822 * 238.15248 * 13 11 10 16 16 C 1.55094 * 102.20786 * 149.41248 * 15 13 11 17 17 C 1.54492 * 104.90104 * 337.83285 * 16 15 13 18 18 N 1.46737 * 106.39987 * 356.48019 * 17 16 15 19 19 C 1.33575 * 148.91987 * 215.90012 * 18 17 16 20 20 O 1.21547 * 124.04867 * 338.38554 * 19 18 17 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.09004 * 110.85443 * 267.59017 * 15 13 11 25 25 H 1.08994 * 110.85886 * 31.22927 * 15 13 11 26 26 H 1.09006 * 110.35675 * 96.69219 * 16 15 13 27 27 H 1.09005 * 110.35722 * 218.86929 * 16 15 13 28 28 H 1.08991 * 110.07115 * 237.24622 * 17 16 15 29 29 H 1.08995 * 110.07055 * 115.70777 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5754 -0.0010 11 6 4.2589 -3.2907 1.1162 12 8 4.0617 -2.9575 2.2650 13 6 4.8432 -4.5919 0.6295 14 1 5.9067 -4.6880 0.8485 15 6 4.0283 -5.8123 1.1024 16 6 4.2508 -6.8229 -0.0529 17 6 4.6434 -5.9553 -1.2694 18 7 4.5518 -4.5586 -0.8291 19 6 4.2517 -3.2878 -1.1103 20 8 4.2122 -2.8309 -2.2360 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6801 -0.8911 23 1 3.8752 -0.6805 0.8888 24 1 4.4228 -6.2025 2.0407 25 1 2.9724 -5.5600 1.1993 26 1 5.0569 -7.5128 0.1968 27 1 3.3322 -7.3727 -0.2579 28 1 3.9534 -6.1335 -2.0941 29 1 5.6634 -6.1839 -1.5783 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348361682.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:29 Heat of formation + Delta-G solvation = -21.609307 kcal Electronic energy + Delta-G solvation = -15671.386484 eV Core-core repulsion = 12982.244179 eV Total energy + Delta-G solvation = -2689.142305 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.99732 -37.89866 -37.48519 -35.02364 -32.96842 -31.43257 -29.82755 -27.71165 -24.86666 -23.16356 -21.35190 -21.02496 -19.54967 -17.42328 -16.87167 -16.53301 -15.59070 -15.20263 -15.03580 -14.50493 -13.98281 -13.94385 -13.35009 -13.03973 -12.54146 -12.33328 -11.98652 -11.84234 -11.57547 -11.26504 -10.90044 -10.68059 -10.39181 -10.11631 -9.71317 -9.58128 -8.89123 -8.66145 -8.55206 -6.15987 -4.17613 2.16683 2.52690 3.26979 3.32883 3.33955 3.55150 3.61536 4.21608 4.33685 4.41814 4.73246 4.89013 5.07343 5.12184 5.16077 5.42202 5.54751 5.59683 5.76023 5.86931 6.06673 6.39601 6.50679 6.67586 7.18534 7.42046 7.82833 8.00147 8.33296 8.69587 8.83829 9.40556 10.96979 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040532 B = 0.008766 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.645934 B = 3193.254239 C = 3362.593524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.221 3.779 10 N -0.556 5.556 11 C 0.524 3.476 12 O -0.472 6.472 13 C 0.042 3.958 14 H 0.129 0.871 15 C -0.112 4.112 16 C -0.136 4.136 17 C 0.161 3.839 18 N -0.647 5.647 19 C 0.738 3.262 20 O -0.536 6.536 21 H 0.267 0.733 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.000 -12.858 1.036 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.094 0.906 9 C 0.102 3.898 10 N -0.299 5.299 11 C 0.311 3.689 12 O -0.342 6.342 13 C -0.068 4.068 14 H 0.146 0.854 15 C -0.151 4.151 16 C -0.175 4.175 17 C 0.040 3.960 18 N -0.389 5.389 19 C 0.442 3.558 20 O -0.408 6.408 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.641 -12.175 0.728 16.186 hybrid contribution 0.227 0.900 -0.031 0.928 sum 10.867 -11.276 0.697 15.676 Atomic orbital electron populations 1.69879 1.06190 1.27298 1.49436 1.24788 0.94840 0.98960 0.93955 0.86842 0.80402 0.83532 0.78993 1.19604 1.20632 1.18807 1.21131 0.88284 0.95345 1.52899 0.90566 1.19951 0.96703 0.74263 0.98879 1.46779 1.59768 1.17257 1.06133 1.20514 0.77059 0.86139 0.85228 1.90733 1.50516 1.74882 1.18075 1.23332 1.02035 0.95803 0.85611 0.85354 1.22438 1.01127 0.92892 0.98625 1.22877 1.02923 0.97614 0.94044 1.21732 1.01776 0.75006 0.97459 1.48421 1.73144 1.06581 1.10787 1.14946 0.77030 0.79146 0.84642 1.90919 1.56104 1.72859 1.20967 0.92259 0.93384 0.93268 0.89085 0.89869 0.89797 0.89902 0.90131 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.96 55.43 0.77 -26.86 15 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 15 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 15 7 C -0.54 -15.94 9.94 -34.44 -0.34 -16.28 15 8 H 0.08 2.47 8.06 -52.48 -0.42 2.05 15 9 C 0.22 5.63 4.57 -5.19 -0.02 5.60 15 10 N -0.56 -12.49 2.61 -122.42 -0.32 -12.81 15 11 C 0.52 10.32 7.66 -10.81 -0.08 10.23 15 12 O -0.47 -10.45 17.82 5.60 0.10 -10.35 15 13 C 0.04 0.58 4.00 -67.20 -0.27 0.31 15 14 H 0.13 1.37 8.14 -51.93 -0.42 0.94 15 15 C -0.11 -1.23 6.60 -25.01 -0.17 -1.39 15 16 C -0.14 -1.10 6.97 -24.84 -0.17 -1.27 15 17 C 0.16 1.70 7.61 -3.13 -0.02 1.67 15 18 N -0.65 -10.31 4.07 -170.10 -0.69 -11.00 15 19 C 0.74 15.78 8.54 -88.48 -0.76 15.02 15 20 O -0.54 -13.25 17.50 5.32 0.09 -13.16 15 21 H 0.27 7.69 8.31 -40.82 -0.34 7.35 15 22 H 0.05 1.22 7.26 -51.93 -0.38 0.84 15 23 H 0.05 1.24 7.11 -51.93 -0.37 0.87 15 24 H 0.09 0.79 8.14 -51.93 -0.42 0.36 15 25 H 0.08 1.11 8.02 -51.93 -0.42 0.69 15 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 15 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 LS Contribution 253.15 15.07 3.81 3.81 Total: -1.00 -35.61 253.15 -6.12 -41.73 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -3.29 Total: -4.38 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -1.93 Total: 16.11 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.24 Total: -50.68 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.19 Total: -23.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -35.61 -6.12 -41.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348361682.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.125 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds