Wall clock time and date at job start Sun Mar 29 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86810 * 119.99896 * 2 1 4 4 H 1.48494 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47056 * 299.99691 * 3 2 1 6 6 H 1.48494 * 109.47063 * 59.99818 * 3 2 1 7 7 C 1.38791 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00222 * 180.02562 * 7 2 1 9 9 O 1.34842 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.34952 * 117.00113 * 179.97438 * 9 7 2 11 11 O 1.21743 * 120.00074 * 0.02562 * 10 9 7 12 12 C 1.41327 * 120.00053 * 180.27742 * 10 9 7 13 13 C 1.35447 * 120.00138 * 179.73003 * 12 10 9 14 14 C 1.46610 * 120.00091 * 180.02562 * 13 12 10 15 15 C 1.44551 * 123.51189 * 179.72713 * 14 13 12 16 16 C 1.32713 * 113.09745 * 179.80397 * 15 14 13 17 17 S 1.75490 * 110.65697 * 0.44548 * 16 15 14 18 18 C 1.36374 * 123.51143 * 0.02562 * 14 13 12 19 19 H 0.97002 * 120.00116 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.99619 * 359.72395 * 12 10 9 21 21 H 1.08001 * 120.00243 * 359.97438 * 13 12 10 22 22 H 1.08002 * 123.44703 * 0.02562 * 15 14 13 23 23 H 1.08005 * 124.67440 * 180.17596 * 16 15 14 24 24 H 1.08008 * 124.60677 * 359.94348 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8895 2.3965 1.2124 7 6 2.0083 -1.2019 0.0005 8 1 3.0883 -1.2019 0.0010 9 8 1.3342 -2.3697 0.0005 10 6 2.0692 -3.5015 0.0005 11 8 3.2849 -3.4378 0.0010 12 6 1.4276 -4.7607 -0.0054 13 6 2.1653 -5.8967 -0.0109 14 6 1.4998 -7.2030 -0.0176 15 6 2.2114 -8.4612 -0.0295 16 6 1.4051 -9.5153 -0.0297 17 16 -0.2753 -9.0094 -0.0279 18 6 0.1448 -7.3577 -0.0192 19 1 -0.4850 0.8401 -0.0004 20 1 0.3491 -4.8172 -0.0054 21 1 3.2439 -5.8402 -0.0112 22 1 3.2888 -8.5357 -0.0340 23 1 1.7373 -10.5430 -0.0349 24 1 -0.5655 -6.5440 -0.0149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379372909.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:56 Heat of formation + Delta-G solvation = -33.963068 kcal Electronic energy + Delta-G solvation = -12075.665335 eV Core-core repulsion = 9660.614356 eV Total energy + Delta-G solvation = -2415.050979 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.07172 -37.72936 -35.31672 -32.62425 -32.18189 -28.95104 -26.14623 -24.66381 -22.15445 -19.58297 -18.22963 -18.05721 -17.67701 -16.35497 -15.16787 -14.69175 -14.43837 -14.32290 -13.34491 -13.15200 -12.89387 -12.46870 -12.22225 -11.62588 -11.41353 -11.30260 -10.79008 -10.56188 -10.41770 -9.83989 -9.83803 -9.06117 -8.90127 -8.62417 -7.78128 -6.48255 -4.07564 0.74023 1.62721 1.63708 2.01639 2.98082 3.17062 3.17622 3.25680 3.96608 4.19958 4.60503 4.92564 5.13935 5.21845 5.31807 5.62458 5.72610 5.85396 6.03925 6.38455 6.42292 6.84908 7.09963 7.37536 7.91617 8.73609 9.00545 9.83719 10.69483 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.074489 B = 0.004946 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.802566 B = 5659.939314 C = 6025.881467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.038 3.962 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.368 4.368 8 H 0.099 0.901 9 O -0.208 6.208 10 C 0.419 3.581 11 O -0.564 6.564 12 C -0.144 4.144 13 C -0.042 4.042 14 C -0.080 4.080 15 C -0.112 4.112 16 C -0.235 4.235 17 S 0.149 5.851 18 C -0.238 4.238 19 H 0.271 0.729 20 H 0.124 0.876 21 H 0.135 0.865 22 H 0.148 0.852 23 H 0.163 0.837 24 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 -15.423 -0.064 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.444 4.444 8 H 0.117 0.883 9 O -0.115 6.115 10 C 0.270 3.730 11 O -0.465 6.465 12 C -0.165 4.165 13 C -0.063 4.063 14 C -0.094 4.094 15 C -0.142 4.142 16 C -0.369 4.369 17 S 0.414 5.586 18 C -0.375 4.375 19 H 0.081 0.919 20 H 0.142 0.858 21 H 0.153 0.847 22 H 0.165 0.835 23 H 0.181 0.819 24 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.087 -16.029 -0.068 16.164 hybrid contribution 1.652 1.647 0.006 2.332 sum -0.435 -14.382 -0.062 14.388 Atomic orbital electron populations 1.70000 1.06158 1.27871 1.45335 1.25429 0.95852 0.99115 0.96239 0.85571 0.79541 0.79742 0.78197 1.18782 1.20056 1.20061 1.21399 0.92663 0.80019 1.50358 0.88342 1.83994 1.39358 1.13633 1.74488 1.19507 0.86347 0.86209 0.80913 1.90685 1.15263 1.88364 1.52168 1.21336 1.00550 0.90986 1.03601 1.21758 0.99889 0.88829 0.95816 1.19424 0.91581 0.93758 1.04618 1.21351 1.00823 0.90422 1.01587 1.25399 0.96554 1.03026 1.11958 1.82879 1.06785 0.97468 1.71451 1.25647 0.99699 1.02025 1.10090 0.91915 0.85765 0.84697 0.83467 0.81925 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.20 13.67 55.49 0.76 -24.44 14 2 C 0.04 1.09 5.50 -17.52 -0.10 0.99 14 3 Si 0.95 21.27 29.55 -169.99 -5.02 16.24 14 4 H -0.26 -5.85 7.11 56.52 0.40 -5.45 14 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 14 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 14 7 C -0.37 -11.07 9.65 30.94 0.30 -10.78 14 8 H 0.10 2.97 6.86 -52.48 -0.36 2.61 14 9 O -0.21 -6.15 9.73 -22.21 -0.22 -6.37 14 10 C 0.42 10.91 7.63 31.91 0.24 11.16 14 11 O -0.56 -15.76 15.36 -19.46 -0.30 -16.06 14 12 C -0.14 -2.92 9.39 -39.40 -0.37 -3.29 14 13 C -0.04 -0.73 9.57 -37.20 -0.36 -1.08 14 14 C -0.08 -1.17 5.97 -104.71 -0.62 -1.79 14 15 C -0.11 -1.34 10.38 -38.98 -0.40 -1.74 14 16 C -0.23 -2.39 11.11 28.85 0.32 -2.07 14 17 S 0.15 1.55 23.02 -107.50 -2.47 -0.92 14 18 C -0.24 -3.15 10.26 30.06 0.31 -2.84 14 19 H 0.27 7.23 8.31 -40.82 -0.34 6.89 14 20 H 0.12 2.27 6.53 -52.49 -0.34 1.93 14 21 H 0.14 2.37 7.45 -52.49 -0.39 1.98 14 22 H 0.15 1.48 8.06 -52.49 -0.42 1.05 14 23 H 0.16 1.20 8.06 -52.48 -0.42 0.77 14 24 H 0.17 2.14 6.81 -52.48 -0.36 1.78 14 LS Contribution 244.18 15.07 3.68 3.68 Total: -1.00 -33.18 244.18 -5.69 -38.87 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -1.43 Total: 0.44 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.68 Total: -11.44 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.76 Total: -24.44 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.51 Total: -22.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.47 Total: -0.92 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.18 -5.69 -38.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379372909.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.906 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds