Wall clock time and date at job start Sun Mar 29 2020 21:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48497 * 109.47190 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47408 * 119.99689 * 3 2 1 6 6 H 1.48508 * 109.46904 * 239.99904 * 3 2 1 7 7 C 1.38814 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99671 * 201.84484 * 7 2 1 9 9 N 1.36934 * 119.99941 * 21.85712 * 7 2 1 10 10 C 1.46503 * 120.00309 * 34.86724 * 9 7 2 11 11 C 1.50700 * 109.47047 * 90.00076 * 10 9 7 12 12 N 1.29026 * 124.91647 * 90.00330 * 11 10 9 13 13 C 1.31776 * 117.12748 * 179.97438 * 12 11 10 14 14 C 1.33646 * 114.50081 * 359.97438 * 13 12 11 15 15 S 1.70975 * 124.91783 * 269.69805 * 11 10 9 16 16 C 1.46494 * 119.99781 * 214.86930 * 9 7 2 17 17 C 1.52996 * 117.50108 * 11.92875 * 16 9 7 18 18 C 1.53002 * 60.00155 * 252.50641 * 17 16 9 19 19 H 0.97000 * 119.99640 * 359.97354 * 1 2 3 20 20 H 1.08994 * 109.47406 * 210.00509 * 10 9 7 21 21 H 1.09007 * 109.46979 * 330.00296 * 10 9 7 22 22 H 1.07998 * 122.75267 * 179.97438 * 13 12 11 23 23 H 1.07993 * 126.04004 * 179.97438 * 14 13 12 24 24 H 1.09007 * 115.55095 * 157.63354 * 16 9 7 25 25 H 1.09003 * 117.49923 * 359.97438 * 17 16 9 26 26 H 1.09003 * 117.50057 * 145.01654 * 17 16 9 27 27 H 1.08992 * 117.50000 * 252.50780 * 18 17 16 28 28 H 1.08997 * 117.51251 * 107.47369 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1040 1.6963 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0321 -1.2356 0.3486 9 7 1.3993 -2.3456 -0.4405 10 6 0.4373 -2.2835 -1.5436 11 6 1.1614 -2.4664 -2.8525 12 7 1.3724 -3.6021 -3.4274 13 6 2.0236 -3.5839 -4.5729 14 6 2.3815 -2.3649 -4.9877 15 16 1.8160 -1.1984 -3.7944 16 6 1.7078 -3.6310 0.1909 17 6 2.4938 -3.6030 1.5032 18 6 3.1724 -4.0730 0.2150 19 1 -0.4849 0.8401 0.0004 20 1 -0.3035 -3.0741 -1.4246 21 1 -0.0614 -1.3142 -1.5366 22 1 2.2495 -4.4806 -5.1308 23 1 2.9197 -2.1352 -5.8953 24 1 0.9501 -4.4060 0.0742 25 1 2.7818 -2.6281 1.8967 26 1 2.2532 -4.3595 2.2503 27 1 3.3782 -5.1386 0.1145 28 1 3.9063 -3.4074 -0.2392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379374376.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:14 Heat of formation + Delta-G solvation = 93.599669 kcal Electronic energy + Delta-G solvation = -13369.546163 eV Core-core repulsion = 11128.152565 eV Total energy + Delta-G solvation = -2241.393598 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.82396 -37.02480 -33.75398 -31.30937 -29.35199 -26.50837 -24.38396 -22.63204 -21.37743 -19.95737 -19.08854 -17.43518 -16.33570 -15.49177 -14.83689 -14.52652 -13.96743 -13.77039 -13.05375 -12.73480 -12.51915 -11.79456 -11.25953 -10.90245 -10.76937 -10.71201 -10.62559 -10.48218 -10.14955 -9.73827 -9.37473 -8.86639 -8.65487 -8.57341 -8.14802 -6.74929 -6.00936 -3.54263 1.47294 2.18914 2.63723 3.28071 3.34538 3.37954 3.55974 4.32628 4.90358 4.97222 5.22926 5.29304 5.66381 5.90231 5.97021 6.11164 6.14101 6.23921 6.48187 6.54167 6.60197 6.86390 6.96669 7.12877 7.29400 7.65890 8.27575 8.54120 8.94659 9.57346 10.13034 10.99158 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.014259 C = 0.010006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.004193 B = 1963.252939 C = 2797.681975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.016 3.984 3 Si 0.894 3.106 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.534 5.534 10 C 0.204 3.796 11 C 0.080 3.920 12 N -0.499 5.499 13 C 0.039 3.961 14 C -0.305 4.305 15 S 0.110 5.890 16 C 0.130 3.870 17 C -0.192 4.192 18 C -0.222 4.222 19 H 0.261 0.739 20 H 0.061 0.939 21 H 0.123 0.877 22 H 0.160 0.840 23 H 0.161 0.839 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -3.052 -5.430 6.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.185 4.185 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.249 5.249 10 C 0.074 3.926 11 C -0.200 4.200 12 N -0.215 5.215 13 C -0.113 4.113 14 C -0.445 4.445 15 S 0.364 5.636 16 C 0.021 3.979 17 C -0.231 4.231 18 C -0.263 4.263 19 H 0.071 0.929 20 H 0.079 0.921 21 H 0.140 0.860 22 H 0.177 0.823 23 H 0.179 0.821 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.998 -2.258 -5.031 5.866 hybrid contribution 1.033 -0.004 -0.656 1.223 sum 3.031 -2.263 -5.687 6.830 Atomic orbital electron populations 1.69916 1.05567 1.26552 1.50078 1.25139 0.95074 0.98847 0.99444 0.86476 0.79526 0.82882 0.78864 1.21150 1.20361 1.20188 1.18996 0.95016 0.85303 1.39643 0.91543 1.43320 1.48965 1.01993 1.30612 1.19970 0.89829 1.04750 0.78024 1.29329 1.00374 0.89286 1.00998 1.66393 1.18007 1.27733 1.09344 1.21667 0.98642 0.97326 0.93686 1.26867 1.14181 0.97111 1.06333 1.84198 1.51310 1.14696 1.13401 1.21113 0.91203 0.89723 0.95826 1.23101 1.06628 1.02227 0.91114 1.23304 1.00624 0.99289 1.03096 0.92867 0.92051 0.85977 0.82296 0.82107 0.88985 0.88248 0.90539 0.90799 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 11.30 55.49 0.63 -22.84 15 2 C 0.02 0.42 4.97 -17.43 -0.09 0.33 15 3 Si 0.89 20.52 29.61 -169.99 -5.03 15.48 15 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.26 -6.69 8.21 -15.06 -0.12 -6.82 15 8 H 0.07 1.75 7.14 -52.49 -0.37 1.37 15 9 N -0.53 -12.91 2.78 -167.02 -0.46 -13.38 15 10 C 0.20 4.74 5.91 -5.19 -0.03 4.71 15 11 C 0.08 1.74 6.97 -13.46 -0.09 1.64 15 12 N -0.50 -10.40 10.54 -11.86 -0.13 -10.52 15 13 C 0.04 0.70 11.35 -19.18 -0.22 0.48 15 14 C -0.30 -5.13 11.37 29.12 0.33 -4.80 15 15 S 0.11 2.16 23.18 -107.50 -2.49 -0.34 15 16 C 0.13 2.83 6.61 -67.93 -0.45 2.38 15 17 C -0.19 -3.83 9.78 -26.73 -0.26 -4.09 15 18 C -0.22 -4.44 10.15 -26.73 -0.27 -4.71 15 19 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 20 H 0.06 1.37 8.04 -51.93 -0.42 0.95 15 21 H 0.12 3.06 5.33 -51.93 -0.28 2.78 15 22 H 0.16 2.28 8.06 -52.49 -0.42 1.86 15 23 H 0.16 2.16 8.06 -52.49 -0.42 1.74 15 24 H 0.09 1.89 8.11 -51.92 -0.42 1.47 15 25 H 0.10 2.15 6.80 -51.93 -0.35 1.80 15 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 28 H 0.08 1.77 8.14 -51.93 -0.42 1.35 15 LS Contribution 258.33 15.07 3.89 3.89 Total: -1.00 -27.16 258.33 -7.89 -35.05 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.09 Total: 3.53 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.20 Total: -10.88 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.04 Total: -46.74 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.49 Total: -0.34 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.16 -7.89 -35.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379374376.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.646 kcal (2) G-P(sol) polarization free energy of solvation -27.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds