Wall clock time and date at job start Sun Mar 29 2020 21:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48497 * 109.47190 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47408 * 119.99689 * 3 2 1 6 6 H 1.48508 * 109.46904 * 239.99904 * 3 2 1 7 7 C 1.38814 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99671 * 201.84484 * 7 2 1 9 9 N 1.36934 * 119.99941 * 21.85712 * 7 2 1 10 10 C 1.46503 * 120.00309 * 34.86724 * 9 7 2 11 11 C 1.50700 * 109.47047 * 90.00076 * 10 9 7 12 12 N 1.29026 * 124.91647 * 90.00330 * 11 10 9 13 13 C 1.31776 * 117.12748 * 179.97438 * 12 11 10 14 14 C 1.33646 * 114.50081 * 359.97438 * 13 12 11 15 15 S 1.70975 * 124.91783 * 269.69805 * 11 10 9 16 16 C 1.46494 * 119.99781 * 214.86930 * 9 7 2 17 17 C 1.52996 * 117.50108 * 11.92875 * 16 9 7 18 18 C 1.53002 * 60.00155 * 252.50641 * 17 16 9 19 19 H 0.97000 * 119.99640 * 359.97354 * 1 2 3 20 20 H 1.08994 * 109.47406 * 210.00509 * 10 9 7 21 21 H 1.09007 * 109.46979 * 330.00296 * 10 9 7 22 22 H 1.07998 * 122.75267 * 179.97438 * 13 12 11 23 23 H 1.07993 * 126.04004 * 179.97438 * 14 13 12 24 24 H 1.09007 * 115.55095 * 157.63354 * 16 9 7 25 25 H 1.09003 * 117.49923 * 359.97438 * 17 16 9 26 26 H 1.09003 * 117.50057 * 145.01654 * 17 16 9 27 27 H 1.08992 * 117.50000 * 252.50780 * 18 17 16 28 28 H 1.08997 * 117.51251 * 107.47369 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1040 1.6963 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0321 -1.2356 0.3486 9 7 1.3993 -2.3456 -0.4405 10 6 0.4373 -2.2835 -1.5436 11 6 1.1614 -2.4664 -2.8525 12 7 1.3724 -3.6021 -3.4274 13 6 2.0236 -3.5839 -4.5729 14 6 2.3815 -2.3649 -4.9877 15 16 1.8160 -1.1984 -3.7944 16 6 1.7078 -3.6310 0.1909 17 6 2.4938 -3.6030 1.5032 18 6 3.1724 -4.0730 0.2150 19 1 -0.4849 0.8401 0.0004 20 1 -0.3035 -3.0741 -1.4246 21 1 -0.0614 -1.3142 -1.5366 22 1 2.2495 -4.4806 -5.1308 23 1 2.9197 -2.1352 -5.8953 24 1 0.9501 -4.4060 0.0742 25 1 2.7818 -2.6281 1.8967 26 1 2.2532 -4.3595 2.2503 27 1 3.3782 -5.1386 0.1145 28 1 3.9063 -3.4074 -0.2392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379374376.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:13 Heat of formation + Delta-G solvation = 78.372776 kcal Electronic energy + Delta-G solvation = -13370.206451 eV Core-core repulsion = 11128.152565 eV Total energy + Delta-G solvation = -2242.053886 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35462 -38.72488 -35.52261 -33.11811 -30.97225 -28.22112 -26.17097 -24.23424 -22.98216 -21.73444 -20.59587 -19.04488 -18.13208 -17.25783 -16.35351 -16.29695 -15.69365 -15.36839 -14.56310 -14.40632 -14.17611 -13.50324 -13.10032 -12.70299 -12.61347 -12.30863 -12.22933 -12.15472 -11.96360 -11.50346 -11.00972 -10.49836 -10.40345 -10.17550 -9.66177 -8.61427 -7.92512 -5.50762 -0.02491 0.69154 1.12738 1.44767 1.48833 1.54286 2.06557 2.46153 3.10418 3.33265 3.50322 3.67332 4.26765 4.40528 4.45416 4.48074 4.62370 4.67182 4.80709 4.90951 5.02026 5.28968 5.33784 5.50451 5.52777 5.64824 6.36420 7.01612 7.04009 7.70822 8.24191 9.04645 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.014259 C = 0.010006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.004193 B = 1963.252939 C = 2797.681975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.020 4.020 3 Si 0.941 3.059 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.263 4.263 8 H 0.055 0.945 9 N -0.549 5.549 10 C 0.211 3.789 11 C 0.055 3.945 12 N -0.509 5.509 13 C 0.023 3.977 14 C -0.274 4.274 15 S 0.092 5.908 16 C 0.104 3.896 17 C -0.183 4.183 18 C -0.206 4.206 19 H 0.259 0.741 20 H 0.057 0.943 21 H 0.101 0.899 22 H 0.197 0.803 23 H 0.203 0.797 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 -3.888 -6.674 8.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.218 4.218 3 Si 0.768 3.232 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.393 4.393 8 H 0.073 0.927 9 N -0.265 5.265 10 C 0.081 3.919 11 C -0.225 4.225 12 N -0.225 5.225 13 C -0.128 4.128 14 C -0.413 4.413 15 S 0.345 5.655 16 C -0.004 4.004 17 C -0.221 4.221 18 C -0.246 4.246 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.119 0.881 22 H 0.214 0.786 23 H 0.220 0.780 24 H 0.119 0.881 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.166 -3.119 -6.279 7.693 hybrid contribution 0.700 0.167 -0.389 0.818 sum 3.865 -2.953 -6.669 8.254 Atomic orbital electron populations 1.70011 1.06493 1.26759 1.51615 1.25641 0.95584 1.00902 0.99699 0.85749 0.78537 0.80178 0.78758 1.21075 1.20148 1.19988 1.18988 0.94484 0.86254 1.39539 0.92737 1.43417 1.49036 1.02377 1.31699 1.19657 0.89805 1.03354 0.79093 1.28795 1.01967 0.90293 1.01465 1.66372 1.18108 1.27586 1.10481 1.22233 0.98426 0.99152 0.92998 1.27304 1.12251 0.95487 1.06291 1.84209 1.51479 1.15341 1.14513 1.21354 0.92453 0.89325 0.97277 1.23091 1.05650 1.02029 0.91346 1.23223 0.98687 1.00270 1.02445 0.93161 0.92442 0.88133 0.78612 0.77994 0.88081 0.90426 0.87571 0.88161 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.41 11.30 21.65 0.24 -49.16 15 2 C -0.02 -1.02 4.97 84.86 0.42 -0.60 15 3 Si 0.94 42.41 29.61 68.60 2.03 44.44 15 4 H -0.29 -12.71 7.11 99.48 0.71 -12.00 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 7 C -0.26 -13.74 8.21 84.03 0.69 -13.05 15 8 H 0.05 2.93 7.14 -2.91 -0.02 2.91 15 9 N -0.55 -26.88 2.78 -682.34 -1.90 -28.78 15 10 C 0.21 9.96 5.91 85.63 0.51 10.47 15 11 C 0.05 2.34 6.97 88.52 0.62 2.96 15 12 N -0.51 -20.42 10.54 -191.45 -2.02 -22.44 15 13 C 0.02 0.73 11.35 83.66 0.95 1.68 15 14 C -0.27 -8.23 11.37 66.78 0.76 -7.47 15 15 S 0.09 3.49 23.18 -56.49 -1.31 2.19 15 16 C 0.10 4.47 6.61 44.99 0.30 4.77 15 17 C -0.18 -7.10 9.78 30.59 0.30 -6.80 15 18 C -0.21 -7.94 10.15 30.60 0.31 -7.63 15 19 H 0.26 13.64 8.31 -92.71 -0.77 12.87 15 20 H 0.06 2.64 8.04 -2.39 -0.02 2.62 15 21 H 0.10 5.21 5.33 -2.38 -0.01 5.20 15 22 H 0.20 4.74 8.06 -2.91 -0.02 4.72 15 23 H 0.20 4.35 8.06 -2.91 -0.02 4.32 15 24 H 0.10 4.09 8.11 -2.38 -0.02 4.07 15 25 H 0.08 3.37 6.80 -2.39 -0.02 3.35 15 26 H 0.11 3.46 8.14 -2.39 -0.02 3.44 15 27 H 0.10 3.32 8.14 -2.39 -0.02 3.30 15 28 H 0.06 2.65 8.14 -2.39 -0.02 2.63 15 Total: -1.00 -58.04 258.33 3.06 -54.98 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.16 Total: 14.46 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.85 Total: -15.69 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -3.67 Total: -100.38 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.31 Total: 2.19 kcal Total: -58.04 3.06 -54.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379374376.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.358 kcal (2) G-P(sol) polarization free energy of solvation -58.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds