Wall clock time and date at job start Sun Mar 29 2020 22:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48498 * 109.47137 * 269.99603 * 3 2 1 5 5 H 1.48499 * 109.47139 * 29.99690 * 3 2 1 6 6 H 1.48507 * 109.47320 * 149.99532 * 3 2 1 7 7 C 1.37880 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99700 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00129 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47174 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99784 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46768 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47266 * 65.00241 * 12 11 10 14 14 C 1.34743 * 120.04634 * 89.99227 * 13 12 11 15 15 N 1.30645 * 121.49165 * 179.74620 * 14 13 12 16 16 C 1.33516 * 121.50417 * 0.26069 * 15 14 13 17 17 C 1.36191 * 119.91272 * 359.97438 * 16 15 14 18 18 C 1.35028 * 120.03780 * 270.25672 * 13 12 11 19 19 O 1.21977 * 120.70946 * 359.97438 * 18 13 12 20 20 H 0.96997 * 120.00030 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47325 * 60.00130 * 9 7 2 22 22 H 1.09004 * 109.46898 * 300.00731 * 9 7 2 23 23 H 1.08998 * 109.47564 * 59.99673 * 11 10 9 24 24 H 1.09003 * 109.46791 * 299.99165 * 11 10 9 25 25 H 1.08995 * 109.47679 * 304.99787 * 12 11 10 26 26 H 1.09009 * 109.46773 * 184.99462 * 12 11 10 27 27 H 1.08002 * 119.25583 * 0.03270 * 14 13 12 28 28 H 1.08007 * 120.04439 * 179.97438 * 16 15 14 29 29 H 1.08009 * 120.70566 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4124 -2.6542 0.0021 12 6 5.8068 -4.1325 0.0025 13 7 5.3697 -4.7549 -1.2496 14 6 6.1902 -4.7689 -2.3184 15 7 5.8313 -5.3204 -3.4470 16 6 4.6332 -5.8909 -3.5949 17 6 3.7552 -5.9063 -2.5540 18 6 4.1421 -5.3106 -1.3357 19 8 3.3861 -5.3022 -0.3785 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6804 -0.8888 23 1 5.8145 -2.1710 0.8925 24 1 5.8158 -2.1704 -0.8875 25 1 5.3304 -4.6355 0.8440 26 1 6.8897 -4.2196 0.0928 27 1 7.1683 -4.3181 -2.2388 28 1 4.3608 -6.3397 -4.5388 29 1 2.7828 -6.3646 -2.6593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385267191.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:47 Heat of formation + Delta-G solvation = -31.572830 kcal Electronic energy + Delta-G solvation = -15173.446313 eV Core-core repulsion = 12483.871958 eV Total energy + Delta-G solvation = -2689.574356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.52979 -37.38561 -37.08070 -35.09841 -32.62689 -30.79668 -30.01937 -27.65347 -24.90382 -23.84909 -22.11382 -21.84843 -18.16891 -17.44233 -16.92413 -16.74174 -15.85178 -15.61803 -14.92496 -14.44547 -14.20666 -14.10853 -13.24222 -12.96711 -12.73558 -12.66475 -12.39934 -11.78465 -11.30893 -10.95508 -10.80364 -10.17058 -10.01113 -9.88002 -9.73026 -9.18915 -8.91975 -8.51253 -8.26764 -6.09948 -4.09120 0.76674 2.11708 2.61264 3.22941 3.29400 3.30460 3.84028 4.10823 4.31436 4.35242 4.63685 4.79403 5.02219 5.19032 5.21068 5.35279 5.52969 5.62626 5.71743 5.87258 5.96449 6.48324 6.50905 6.80482 6.93857 7.57755 7.85712 7.95469 8.20711 8.64745 9.05190 9.48380 11.03316 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.036215 B = 0.007216 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.980235 B = 3879.086155 C = 4090.525951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.084 0.916 9 C 0.170 3.830 10 O -0.364 6.364 11 C 0.039 3.961 12 C 0.092 3.908 13 N -0.515 5.515 14 C 0.370 3.630 15 N -0.553 5.553 16 C 0.136 3.864 17 C -0.278 4.278 18 C 0.516 3.484 19 O -0.502 6.502 20 H 0.266 0.734 21 H 0.004 0.996 22 H -0.005 1.005 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.198 0.802 28 H 0.161 0.839 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.087 -8.481 -4.442 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.102 0.898 9 C 0.094 3.906 10 O -0.283 6.283 11 C -0.040 4.040 12 C -0.031 4.031 13 N -0.233 5.233 14 C 0.086 3.914 15 N -0.277 5.277 16 C -0.001 4.001 17 C -0.303 4.303 18 C 0.313 3.687 19 O -0.376 6.376 20 H 0.076 0.924 21 H 0.021 0.979 22 H 0.013 0.987 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.214 0.786 28 H 0.179 0.821 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.634 -8.603 -4.488 18.400 hybrid contribution -0.014 1.311 0.509 1.406 sum 15.619 -7.292 -3.979 17.691 Atomic orbital electron populations 1.69879 1.06050 1.27011 1.50321 1.24772 0.94802 0.98638 0.94738 0.86857 0.80307 0.83888 0.78688 1.19990 1.20708 1.19194 1.20890 0.88154 0.95446 1.51010 0.89819 1.20617 0.96485 0.79309 0.94144 1.88122 1.15866 1.29363 1.94941 1.22711 0.86997 0.93912 1.00361 1.22158 1.00299 0.94237 0.86378 1.46814 1.16109 1.46740 1.13634 1.24882 0.95464 0.89526 0.81558 1.68331 1.19921 1.18074 1.21350 1.22526 0.87840 0.91246 0.98534 1.23009 1.04094 1.09345 0.93860 1.17250 0.80693 0.80096 0.90631 1.91029 1.49454 1.57647 1.39426 0.92368 0.97875 0.98689 0.92237 0.93940 0.87263 0.87751 0.78565 0.82131 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.38 13.96 55.43 0.77 -27.60 15 2 C 0.07 2.18 5.47 -17.82 -0.10 2.09 15 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 15 7 C -0.52 -16.01 9.99 -34.44 -0.34 -16.36 15 8 H 0.08 2.91 8.06 -52.49 -0.42 2.49 15 9 C 0.17 4.40 4.76 36.01 0.17 4.57 15 10 O -0.36 -8.66 9.12 -42.41 -0.39 -9.04 15 11 C 0.04 0.62 6.28 37.16 0.23 0.85 15 12 C 0.09 1.13 5.82 -4.04 -0.02 1.11 15 13 N -0.51 -7.25 2.55 -121.10 -0.31 -7.56 15 14 C 0.37 4.00 11.48 -90.53 -1.04 2.96 15 15 N -0.55 -6.77 10.39 -14.48 -0.15 -6.92 15 16 C 0.14 1.68 11.20 -17.56 -0.20 1.48 15 17 C -0.28 -4.21 10.07 -39.26 -0.40 -4.60 15 18 C 0.52 9.39 7.06 -15.09 -0.11 9.28 15 19 O -0.50 -11.57 16.02 -2.24 -0.04 -11.61 15 20 H 0.27 7.79 8.31 -40.82 -0.34 7.45 15 21 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 15 22 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.11 1.56 7.46 -51.93 -0.39 1.17 15 26 H 0.10 0.69 8.02 -51.92 -0.42 0.28 15 27 H 0.20 1.11 8.03 -52.49 -0.42 0.69 15 28 H 0.16 1.44 8.06 -52.48 -0.42 1.02 15 29 H 0.15 2.13 8.06 -52.48 -0.42 1.71 15 LS Contribution 259.43 15.07 3.91 3.91 Total: -1.00 -38.39 259.43 -5.94 -44.33 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -3.27 Total: -3.92 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.80 Total: 1.38 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.31 Total: -42.08 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.42 Total: -20.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -38.39 -5.94 -44.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385267191.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.759 kcal (2) G-P(sol) polarization free energy of solvation -38.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds