Wall clock time and date at job start Sun Mar 29 2020 22:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48498 * 109.47137 * 269.99603 * 3 2 1 5 5 H 1.48499 * 109.47139 * 29.99690 * 3 2 1 6 6 H 1.48507 * 109.47320 * 149.99532 * 3 2 1 7 7 C 1.37880 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99700 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00129 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47174 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99784 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46768 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47266 * 65.00241 * 12 11 10 14 14 C 1.34743 * 120.04634 * 89.99227 * 13 12 11 15 15 N 1.30645 * 121.49165 * 179.74620 * 14 13 12 16 16 C 1.33516 * 121.50417 * 0.26069 * 15 14 13 17 17 C 1.36191 * 119.91272 * 359.97438 * 16 15 14 18 18 C 1.35028 * 120.03780 * 270.25672 * 13 12 11 19 19 O 1.21977 * 120.70946 * 359.97438 * 18 13 12 20 20 H 0.96997 * 120.00030 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47325 * 60.00130 * 9 7 2 22 22 H 1.09004 * 109.46898 * 300.00731 * 9 7 2 23 23 H 1.08998 * 109.47564 * 59.99673 * 11 10 9 24 24 H 1.09003 * 109.46791 * 299.99165 * 11 10 9 25 25 H 1.08995 * 109.47679 * 304.99787 * 12 11 10 26 26 H 1.09009 * 109.46773 * 184.99462 * 12 11 10 27 27 H 1.08002 * 119.25583 * 0.03270 * 14 13 12 28 28 H 1.08007 * 120.04439 * 179.97438 * 16 15 14 29 29 H 1.08009 * 120.70566 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4124 -2.6542 0.0021 12 6 5.8068 -4.1325 0.0025 13 7 5.3697 -4.7549 -1.2496 14 6 6.1902 -4.7689 -2.3184 15 7 5.8313 -5.3204 -3.4470 16 6 4.6332 -5.8909 -3.5949 17 6 3.7552 -5.9063 -2.5540 18 6 4.1421 -5.3106 -1.3357 19 8 3.3861 -5.3022 -0.3785 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6804 -0.8888 23 1 5.8145 -2.1710 0.8925 24 1 5.8158 -2.1704 -0.8875 25 1 5.3304 -4.6355 0.8440 26 1 6.8897 -4.2196 0.0928 27 1 7.1683 -4.3181 -2.2388 28 1 4.3608 -6.3397 -4.5388 29 1 2.7828 -6.3646 -2.6593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385267191.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:47 Heat of formation + Delta-G solvation = -60.986651 kcal Electronic energy + Delta-G solvation = -15174.721792 eV Core-core repulsion = 12483.871958 eV Total energy + Delta-G solvation = -2690.849835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.65477 -38.82708 -38.52402 -36.34353 -34.87068 -31.91504 -31.44561 -29.59152 -25.97142 -25.04547 -24.01840 -23.20618 -19.29919 -19.11590 -18.52490 -17.87589 -17.36507 -17.11747 -16.40725 -16.27206 -15.41437 -15.32389 -14.84937 -14.56838 -14.09545 -13.91508 -13.76239 -13.32588 -12.89072 -12.79081 -12.55879 -11.85569 -11.44867 -11.28092 -11.16040 -11.03608 -10.93551 -10.39578 -9.48212 -8.41197 -6.50830 -0.23490 0.95788 1.28632 1.34257 1.45032 1.56710 2.26043 2.69821 2.90699 3.03797 3.30012 3.67086 3.80708 4.02633 4.08599 4.25681 4.44724 4.45716 4.53332 4.65530 4.81755 4.90866 4.96550 5.38646 5.49759 5.67933 5.90120 6.54643 6.72923 6.83806 6.95503 7.13979 8.77356 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.036215 B = 0.007216 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.980235 B = 3879.086155 C = 4090.525951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.550 4.550 8 H 0.012 0.988 9 C 0.183 3.817 10 O -0.405 6.405 11 C 0.023 3.977 12 C 0.093 3.907 13 N -0.516 5.516 14 C 0.383 3.617 15 N -0.562 5.562 16 C 0.169 3.831 17 C -0.326 4.326 18 C 0.497 3.503 19 O -0.578 6.578 20 H 0.274 0.726 21 H 0.018 0.982 22 H 0.011 0.989 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.180 0.820 27 H 0.262 0.738 28 H 0.197 0.803 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.561 -6.627 -5.579 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.162 1.162 7 C -0.588 4.588 8 H 0.031 0.969 9 C 0.107 3.893 10 O -0.325 6.325 11 C -0.055 4.055 12 C -0.028 4.028 13 N -0.231 5.231 14 C 0.101 3.899 15 N -0.285 5.285 16 C 0.030 3.970 17 C -0.351 4.351 18 C 0.297 3.703 19 O -0.458 6.458 20 H 0.083 0.917 21 H 0.036 0.964 22 H 0.029 0.971 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.197 0.803 27 H 0.277 0.723 28 H 0.213 0.787 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 20.181 -6.767 -5.642 22.021 hybrid contribution -1.344 0.609 0.792 1.675 sum 18.837 -6.158 -4.850 20.403 Atomic orbital electron populations 1.70070 1.08636 1.28926 1.50966 1.26019 0.95907 1.03873 0.93169 0.85458 0.79462 0.76497 0.79901 1.18197 1.19747 1.16178 1.21186 0.91549 0.93328 1.52746 0.96919 1.20273 0.92896 0.81034 0.95092 1.88095 1.21186 1.27943 1.95285 1.23241 0.82770 0.96740 1.02708 1.22447 1.04083 0.91477 0.84759 1.46873 1.15151 1.45794 1.15303 1.26185 0.96518 0.87408 0.79767 1.68475 1.19436 1.18523 1.22075 1.23014 0.86883 0.88553 0.98551 1.22965 1.05342 1.12505 0.94326 1.17779 0.81649 0.80202 0.90630 1.90978 1.52006 1.61031 1.41772 0.91733 0.96443 0.97127 0.89717 0.91421 0.90111 0.80254 0.72297 0.78657 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.46 13.96 21.45 0.30 -62.16 15 2 C 0.01 0.47 5.47 84.66 0.46 0.93 15 3 Si 0.97 44.11 27.47 68.60 1.88 46.00 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.24 -9.74 6.54 99.48 0.65 -9.09 15 7 C -0.55 -35.80 9.99 25.60 0.26 -35.54 15 8 H 0.01 0.95 8.06 -2.91 -0.02 0.93 15 9 C 0.18 9.42 4.76 71.24 0.34 9.76 15 10 O -0.41 -19.54 9.12 -142.11 -1.30 -20.83 15 11 C 0.02 0.65 6.28 71.98 0.45 1.10 15 12 C 0.09 2.06 5.82 86.38 0.50 2.56 15 13 N -0.52 -13.58 2.55 -655.02 -1.67 -15.25 15 14 C 0.38 6.59 11.48 180.32 2.07 8.66 15 15 N -0.56 -11.72 10.39 -199.73 -2.08 -13.79 15 16 C 0.17 3.89 11.20 83.96 0.94 4.83 15 17 C -0.33 -10.33 10.07 22.48 0.23 -10.11 15 18 C 0.50 18.95 7.06 84.88 0.60 19.55 15 19 O -0.58 -29.18 16.02 1.63 0.03 -29.15 15 20 H 0.27 16.41 8.31 -92.71 -0.77 15.64 15 21 H 0.02 0.86 7.20 -2.39 -0.02 0.84 15 22 H 0.01 0.53 7.57 -2.38 -0.02 0.51 15 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.08 2.31 7.46 -2.39 -0.02 2.29 15 26 H 0.18 1.22 8.02 -2.38 -0.02 1.20 15 27 H 0.26 0.94 8.03 -2.91 -0.02 0.92 15 28 H 0.20 2.98 8.06 -2.91 -0.02 2.95 15 29 H 0.14 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -94.79 259.43 4.10 -90.69 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.09 Total: 2.75 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.85 Total: 1.75 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -3.45 Total: -91.21 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.27 Total: -49.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -94.79 4.10 -90.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385267191.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.699 kcal (2) G-P(sol) polarization free energy of solvation -94.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds