Wall clock time and date at job start Sun Mar 29 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47267 * 2 1 4 4 C 1.52999 * 109.47256 * 120.00105 * 2 1 3 5 5 C 1.50694 * 109.47340 * 294.99893 * 4 2 1 6 6 H 1.08007 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00294 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00177 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99922 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47199 * 90.00154 * 9 7 5 11 11 H 1.48506 * 109.47458 * 210.00033 * 9 7 5 12 12 H 1.48500 * 109.47279 * 329.99860 * 9 7 5 13 13 C 1.53006 * 109.47350 * 240.00344 * 2 1 3 14 14 N 1.46903 * 109.46827 * 64.99912 * 13 2 1 15 15 C 1.46900 * 110.99556 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.35998 * 34.72245 * 15 14 13 17 17 C 1.50068 * 109.35797 * 274.99577 * 15 14 13 18 18 C 1.29439 * 124.07858 * 222.66889 * 17 15 14 19 19 C 1.50068 * 124.07470 * 0.48435 * 18 17 15 20 20 C 1.53025 * 110.03748 * 342.92034 * 19 18 17 21 21 C 1.53026 * 109.35594 * 154.31015 * 15 14 13 22 22 H 1.08993 * 109.46810 * 299.99743 * 1 2 3 23 23 H 1.08993 * 109.47055 * 59.99788 * 1 2 3 24 24 H 1.08996 * 109.46656 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46993 * 55.00636 * 4 2 1 26 26 H 1.09004 * 109.46885 * 174.99787 * 4 2 1 27 27 H 0.96997 * 119.99952 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46782 * 305.00258 * 13 2 1 29 29 H 1.09002 * 109.47065 * 184.99412 * 13 2 1 30 30 H 1.00896 * 111.00401 * 56.04821 * 14 13 2 31 31 H 1.08001 * 117.95709 * 42.68579 * 17 15 14 32 32 H 1.07995 * 117.96212 * 180.47024 * 18 17 15 33 33 H 1.09002 * 109.35724 * 103.06001 * 19 18 17 34 34 H 1.08998 * 109.35998 * 222.78642 * 19 18 17 35 35 H 1.08990 * 109.64476 * 169.04805 * 20 19 18 36 36 H 1.09003 * 109.64270 * 289.68198 * 20 19 18 37 37 H 1.08997 * 109.63771 * 289.32161 * 21 15 14 38 38 H 1.08996 * 109.64438 * 49.95437 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4023 3.7282 8 7 1.6442 0.2766 4.7994 9 14 2.9628 -1.9889 3.9027 10 1 4.4162 -1.6854 3.8791 11 1 2.6146 -2.6433 5.1896 12 1 2.6290 -2.8996 2.7782 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0376 -2.4457 15 6 2.1249 -0.6269 -3.6672 16 1 2.0848 -1.7075 -3.5295 17 6 3.5408 -0.2127 -3.9420 18 6 3.9925 0.0920 -5.1161 19 6 3.1608 0.0836 -6.3652 20 6 1.8785 -0.7194 -6.1359 21 6 1.2238 -0.2341 -4.8400 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.6055 -1.7199 1.2950 26 1 3.1264 -0.7995 1.2055 27 1 1.8915 -0.0463 5.6800 28 1 1.6055 -1.7197 -1.2953 29 1 3.1264 -0.7993 -1.2057 30 1 1.9882 0.9874 -2.3967 31 1 4.2256 -0.1661 -3.1082 32 1 5.0326 0.3697 -5.2022 33 1 2.9025 1.1078 -6.6342 34 1 3.7309 -0.3701 -7.1759 35 1 1.1941 -0.5628 -6.9695 36 1 2.1200 -1.7789 -6.0501 37 1 0.2467 -0.7030 -4.7243 38 1 1.1124 0.8498 -4.8695 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389309403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:00 Heat of formation + Delta-G solvation = -30.830984 kcal Electronic energy + Delta-G solvation = -15208.156255 eV Core-core repulsion = 12855.706168 eV Total energy + Delta-G solvation = -2352.450087 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92721 -37.76933 -35.21716 -33.82995 -31.93268 -30.22698 -28.89019 -26.48042 -24.17966 -23.03253 -22.92523 -20.84410 -19.03416 -18.79044 -17.25977 -16.50214 -16.04510 -15.74532 -15.50178 -14.96589 -14.77968 -14.39063 -13.95031 -13.61671 -13.56502 -13.36044 -13.20474 -12.88196 -12.82646 -12.48923 -12.14131 -11.88720 -11.79808 -11.52613 -11.49623 -11.17819 -11.15062 -10.93747 -10.74008 -10.12819 -9.21034 -8.26611 -6.28985 1.31699 1.34708 1.36800 1.48685 2.37095 3.08493 3.29929 3.80946 3.89837 4.09195 4.20010 4.29003 4.35645 4.45762 4.47487 4.61351 4.65316 4.80187 4.85591 4.92199 4.95169 5.02445 5.05278 5.10339 5.20180 5.37264 5.40555 5.42321 5.46532 5.55698 5.68267 5.71613 5.72903 5.95783 6.15771 6.34721 6.52150 6.78529 7.34581 8.90252 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050472 B = 0.005040 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.627373 B = 5554.516431 C = 5812.229470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 H 0.048 0.952 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.075 3.925 14 N -0.678 5.678 15 C 0.116 3.884 16 H 0.075 0.925 17 C -0.204 4.204 18 C -0.138 4.138 19 C -0.092 4.092 20 C -0.118 4.118 21 C -0.102 4.102 22 H 0.027 0.973 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.341 0.659 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 -3.364 -23.353 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.045 4.045 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.172 1.172 13 C -0.054 4.054 14 N -0.307 5.307 15 C 0.007 3.993 16 H 0.093 0.907 17 C -0.224 4.224 18 C -0.157 4.157 19 C -0.129 4.129 20 C -0.156 4.156 21 C -0.140 4.140 22 H 0.046 0.954 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.159 0.841 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.513 -3.651 -23.192 23.611 hybrid contribution 1.451 -0.104 1.148 1.854 sum 3.964 -3.756 -22.043 22.709 Atomic orbital electron populations 1.21489 0.94954 1.00686 1.00112 1.20894 0.96578 0.98380 0.93070 0.93308 1.19568 0.95604 0.95935 0.93352 1.21452 1.34371 1.08652 0.91256 0.94727 1.25992 0.97040 1.00897 0.95504 1.70072 1.49101 1.41611 0.98713 0.85694 0.79144 0.79967 0.78043 1.19346 1.21042 1.17154 1.21930 0.96963 0.97393 0.89137 1.60694 1.63276 1.05790 1.00931 1.20493 0.90122 0.98276 0.90426 0.90705 1.22822 0.98191 1.03398 0.97991 1.22308 1.00092 0.98618 0.94706 1.20546 0.95582 1.01327 0.95458 1.21574 0.96824 0.99788 0.97375 1.21465 0.98190 1.01382 0.92940 0.95426 0.91538 0.93793 0.96389 0.96897 0.92654 0.91331 0.95748 0.84072 0.89330 0.87451 0.90039 0.89645 0.89997 0.91942 0.91449 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.89 71.98 0.64 -3.82 16 2 C -0.07 -2.78 2.48 -10.79 -0.03 -2.81 16 3 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 4 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 5 C -0.52 -30.39 8.96 25.60 0.23 -30.17 16 6 H 0.03 2.23 7.30 -2.91 -0.02 2.21 16 7 C 0.00 0.11 5.47 84.65 0.46 0.57 16 8 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 9 Si 0.95 45.20 27.47 68.60 1.88 47.09 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 13 C 0.07 2.38 4.86 86.30 0.42 2.80 16 14 N -0.68 -18.31 5.69 -496.41 -2.82 -21.14 16 15 C 0.12 2.65 2.72 43.98 0.12 2.77 16 16 H 0.07 1.79 7.79 -2.39 -0.02 1.77 16 17 C -0.20 -4.45 8.91 27.04 0.24 -4.21 16 18 C -0.14 -2.49 9.80 27.04 0.27 -2.22 16 19 C -0.09 -1.29 6.13 29.66 0.18 -1.11 16 20 C -0.12 -1.73 5.98 30.63 0.18 -1.54 16 21 C -0.10 -1.93 5.61 30.63 0.17 -1.76 16 22 H 0.03 1.21 6.95 -2.39 -0.02 1.19 16 23 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 26 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 27 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.07 2.16 8.05 -2.39 -0.02 2.14 16 29 H 0.02 0.77 7.65 -2.39 -0.02 0.75 16 30 H 0.34 9.13 8.46 -89.70 -0.76 8.37 16 31 H 0.09 2.13 7.67 -2.91 -0.02 2.11 16 32 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.23 8.12 -2.39 -0.02 1.22 16 Total: -1.00 -64.66 299.06 2.54 -62.13 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.19 Total: 14.29 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 2.99 Total: -41.72 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.52 Total: -81.78 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -64.66 2.54 -62.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389309403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.295 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds