Wall clock time and date at job start Sun Mar 29 2020 21:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47340 * 2 1 4 4 C 1.53004 * 109.46995 * 240.00131 * 2 1 3 5 5 C 1.50701 * 109.47242 * 65.00012 * 4 2 1 6 6 H 1.08002 * 119.99589 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00214 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99940 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99868 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47114 * 89.99431 * 9 7 5 11 11 H 1.48503 * 109.46654 * 209.99538 * 9 7 5 12 12 H 1.48501 * 109.46920 * 329.99321 * 9 7 5 13 13 C 1.53003 * 109.47081 * 120.00380 * 2 1 3 14 14 N 1.46899 * 109.46795 * 294.99685 * 13 2 1 15 15 C 1.46903 * 110.99531 * 179.97438 * 14 13 2 16 16 H 1.08992 * 109.35754 * 34.72379 * 15 14 13 17 17 C 1.50068 * 109.36058 * 274.99959 * 15 14 13 18 18 C 1.29439 * 124.07858 * 222.80634 * 17 15 14 19 19 C 1.50068 * 124.07470 * 0.48435 * 18 17 15 20 20 C 1.53025 * 110.03748 * 342.92034 * 19 18 17 21 21 C 1.53026 * 109.24304 * 154.38190 * 15 14 13 22 22 H 1.09001 * 109.47634 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47372 * 299.99809 * 1 2 3 24 24 H 1.09001 * 109.47123 * 59.99759 * 1 2 3 25 25 H 1.08994 * 109.47169 * 185.00107 * 4 2 1 26 26 H 1.08997 * 109.47325 * 305.00418 * 4 2 1 27 27 H 0.97000 * 119.99511 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.46926 * 174.99691 * 13 2 1 29 29 H 1.08996 * 109.46912 * 54.99683 * 13 2 1 30 30 H 1.00900 * 110.99959 * 56.05221 * 14 13 2 31 31 H 1.08001 * 117.95709 * 42.82324 * 17 15 14 32 32 H 1.07995 * 117.96212 * 180.47024 * 18 17 15 33 33 H 1.09002 * 109.35724 * 103.06001 * 19 18 17 34 34 H 1.08998 * 109.35998 * 222.78642 * 19 18 17 35 35 H 1.08990 * 109.64476 * 169.04805 * 20 19 18 36 36 H 1.09003 * 109.64270 * 289.68198 * 20 19 18 37 37 H 1.08997 * 109.63771 * 289.25394 * 21 15 14 38 38 H 1.08996 * 109.64438 * 49.88670 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9931 -0.4016 -3.7283 8 7 1.6447 0.2774 -4.7995 9 14 2.9635 -1.9883 -3.9029 10 1 2.0243 -3.1325 -4.0201 11 1 3.8124 -1.9179 -5.1194 12 1 3.8252 -2.1755 -2.7080 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1247 -0.6273 3.6671 16 1 3.0858 -1.1025 3.4707 17 6 1.1298 -1.6709 4.0832 18 6 0.7511 -1.8656 5.3055 19 6 1.2464 -1.0681 6.4763 20 6 2.5271 -0.3211 6.0977 21 6 2.2909 0.4141 4.7759 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1262 -0.7995 -1.2057 26 1 1.6053 -1.7197 -1.2953 27 1 1.8920 -0.0456 -5.6801 28 1 3.1262 -0.7996 1.2055 29 1 1.6053 -1.7198 1.2951 30 1 0.6528 0.1792 2.4753 31 1 0.7033 -2.2987 3.3148 32 1 0.0340 -2.6507 5.4946 33 1 0.4827 -0.3488 6.7725 34 1 1.4528 -1.7396 7.3096 35 1 2.7739 0.4010 6.8760 36 1 3.3450 -1.0321 5.9806 37 1 3.1455 1.0530 4.5533 38 1 1.3869 1.0185 4.8494 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389309405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:04 Heat of formation + Delta-G solvation = -30.672006 kcal Electronic energy + Delta-G solvation = -15227.344715 eV Core-core repulsion = 12874.901522 eV Total energy + Delta-G solvation = -2352.443193 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95894 -37.82299 -35.21384 -33.80718 -31.93474 -30.24677 -28.87521 -26.65989 -24.18141 -23.04304 -22.89646 -20.68163 -19.15649 -18.78378 -17.31791 -16.61722 -16.10064 -15.78022 -15.32117 -14.92811 -14.84343 -14.40558 -13.86611 -13.59478 -13.55982 -13.48304 -13.34888 -12.95570 -12.82612 -12.56050 -12.11902 -11.88562 -11.72545 -11.58075 -11.48711 -11.19222 -11.13218 -10.95487 -10.74000 -10.12769 -9.23067 -8.26374 -6.28739 1.32035 1.35078 1.37184 1.49059 2.37420 3.08769 3.29927 3.80740 3.89541 4.11565 4.19701 4.25385 4.34319 4.38283 4.47459 4.59353 4.64609 4.74216 4.81405 4.85091 4.98989 4.99886 5.04678 5.05427 5.19462 5.28515 5.36316 5.40415 5.45720 5.54214 5.68958 5.70714 5.72697 5.95700 6.16599 6.34749 6.53136 6.78691 7.34810 8.90467 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053932 B = 0.004951 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.052481 B = 5653.531781 C = 5772.715367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 H 0.053 0.947 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.035 0.965 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.075 3.925 14 N -0.684 5.684 15 C 0.115 3.885 16 H 0.074 0.926 17 C -0.204 4.204 18 C -0.137 4.137 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.103 4.103 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.035 0.965 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.265 0.735 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.343 0.657 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -5.041 23.447 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.172 1.172 13 C -0.054 4.054 14 N -0.314 5.314 15 C 0.005 3.995 16 H 0.092 0.908 17 C -0.224 4.224 18 C -0.156 4.156 19 C -0.129 4.129 20 C -0.156 4.156 21 C -0.141 4.141 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.163 0.837 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.979 -4.603 23.217 23.689 hybrid contribution -0.449 -1.229 -1.041 1.672 sum 0.530 -5.832 22.176 22.936 Atomic orbital electron populations 1.21652 0.95365 1.00892 1.00645 1.20898 0.95964 0.99051 0.93144 0.92875 1.19554 0.95947 0.95603 0.93274 1.21454 1.34368 1.08681 0.91243 0.94719 1.25995 0.96976 1.00964 0.95501 1.70076 1.49076 1.41638 0.98706 0.85689 0.79366 0.79526 0.78246 1.19275 1.21071 1.17192 1.21917 0.99814 0.94528 0.89187 1.60751 1.20205 1.49423 1.01012 1.20503 0.96597 0.92321 0.90048 0.90778 1.22804 1.01370 1.00502 0.97682 1.22313 0.99352 0.99459 0.94507 1.20549 0.97519 0.98694 0.96173 1.21574 0.97651 0.99500 0.96835 1.21474 1.02151 0.97025 0.93441 0.93341 0.91770 0.94591 0.96610 0.96601 0.92657 0.91771 0.95212 0.83749 0.89086 0.87259 0.90000 0.89587 0.90024 0.91951 0.91643 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.77 71.98 0.63 -4.12 16 2 C -0.07 -2.85 2.55 -10.79 -0.03 -2.87 16 3 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.01 -0.28 3.52 29.85 0.10 -0.18 16 5 C -0.52 -30.40 8.96 25.60 0.23 -30.17 16 6 H 0.03 2.23 7.30 -2.91 -0.02 2.21 16 7 C 0.00 0.10 5.47 84.65 0.46 0.57 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 13 C 0.07 2.40 4.93 86.30 0.43 2.83 16 14 N -0.68 -18.93 6.23 -496.45 -3.09 -22.02 16 15 C 0.11 2.66 2.73 43.98 0.12 2.78 16 16 H 0.07 1.82 7.79 -2.39 -0.02 1.80 16 17 C -0.20 -4.38 8.91 27.04 0.24 -4.14 16 18 C -0.14 -2.42 9.80 27.04 0.27 -2.15 16 19 C -0.09 -1.28 6.13 29.66 0.18 -1.10 16 20 C -0.12 -1.76 5.98 30.63 0.18 -1.57 16 21 C -0.10 -2.01 5.60 30.63 0.17 -1.84 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 1.97 6.68 -2.39 -0.02 1.95 16 24 H 0.03 1.54 6.95 -2.39 -0.02 1.52 16 25 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 26 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 27 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 29 H 0.03 0.92 7.65 -2.39 -0.02 0.90 16 30 H 0.34 9.16 6.71 -89.69 -0.60 8.55 16 31 H 0.09 2.11 7.67 -2.91 -0.02 2.09 16 32 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 Total: -1.00 -64.95 296.79 2.43 -62.52 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.35 Total: 15.02 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 2.99 Total: -41.97 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -2.79 Total: -82.65 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -64.95 2.43 -62.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389309405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.851 kcal (2) G-P(sol) polarization free energy of solvation -64.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds