Wall clock time and date at job start Sun Mar 29 2020 21:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47312 * 2 1 4 4 C 1.36939 * 119.99770 * 275.30552 * 3 2 1 5 5 H 1.07998 * 120.00210 * 37.58549 * 4 3 2 6 6 C 1.38814 * 120.00214 * 217.57921 * 4 3 2 7 7 N 1.31617 * 119.99766 * 21.42419 * 6 4 3 8 8 Si 1.86803 * 120.00149 * 201.42985 * 6 4 3 9 9 H 1.48504 * 109.46862 * 89.99815 * 8 6 4 10 10 H 1.48492 * 109.47008 * 209.99917 * 8 6 4 11 11 H 1.48494 * 109.46879 * 329.99903 * 8 6 4 12 12 C 1.46496 * 120.00252 * 95.31160 * 3 2 1 13 13 C 1.52999 * 109.47006 * 269.99908 * 12 3 2 14 14 C 1.50695 * 109.47606 * 180.02562 * 13 12 3 15 15 C 1.29444 * 117.96729 * 94.73174 * 14 13 12 16 16 C 1.50064 * 124.08069 * 180.75239 * 15 14 13 17 17 C 1.53025 * 110.14473 * 342.87492 * 16 15 14 18 18 C 1.53383 * 108.44142 * 49.43318 * 17 16 15 19 19 C 1.50071 * 117.96265 * 275.00218 * 14 13 12 20 20 H 1.09001 * 109.47381 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47004 * 300.00261 * 1 2 3 22 22 H 1.09004 * 109.47074 * 59.99849 * 1 2 3 23 23 H 1.09006 * 109.47004 * 239.99739 * 2 1 3 24 24 H 1.09004 * 109.47074 * 120.00151 * 2 1 3 25 25 H 0.97002 * 120.00029 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47381 * 150.00215 * 12 3 2 27 27 H 1.09004 * 109.47477 * 29.99745 * 12 3 2 28 28 H 1.09002 * 109.47322 * 59.99401 * 13 12 3 29 29 H 1.09003 * 109.47142 * 299.99732 * 13 12 3 30 30 H 1.08005 * 117.95539 * 0.73130 * 15 14 13 31 31 H 1.08994 * 109.35878 * 222.66328 * 16 15 14 32 32 H 1.08999 * 109.35513 * 103.07765 * 16 15 14 33 33 H 1.08997 * 109.63730 * 289.74756 * 17 16 15 34 34 H 1.09006 * 109.63903 * 169.11797 * 17 16 15 35 35 H 1.09000 * 109.64931 * 172.87880 * 18 17 16 36 36 H 1.09005 * 109.64304 * 52.24870 * 18 17 16 37 37 H 1.09003 * 109.35785 * 282.79271 * 19 14 13 38 38 H 1.09007 * 109.35555 * 42.51231 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3729 7 7 4.3027 2.7979 -0.6491 8 14 3.0995 4.2794 -2.6586 9 1 2.5378 5.5068 -2.0396 10 1 4.4551 4.5693 -3.1910 11 1 2.2168 3.8356 -3.7672 12 6 2.3733 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5078 3.4090 3.1356 15 6 1.8453 4.6582 3.1000 16 6 2.2490 5.4549 4.3059 17 6 1.8049 4.7389 5.5833 18 6 2.2567 3.2754 5.5014 19 6 1.4635 2.5856 4.3894 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 5.0490 3.4030 -0.7830 26 1 3.1617 2.7641 1.0859 27 1 2.7255 1.2833 1.9721 28 1 0.3541 2.0069 2.0138 29 1 0.7904 3.4877 1.1276 30 1 1.8360 5.1580 2.1426 31 1 1.7818 6.4386 4.2619 32 1 3.3326 5.5718 4.3153 33 1 0.7193 4.7830 5.6694 34 1 2.2640 5.2162 6.4492 35 1 2.0632 2.7783 6.4520 36 1 3.3216 3.2329 5.2723 37 1 0.4275 2.4650 4.7061 38 1 1.8978 1.6052 4.1933 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395326215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:19 Heat of formation + Delta-G solvation = 4.455127 kcal Electronic energy + Delta-G solvation = -15838.875052 eV Core-core repulsion = 13487.955086 eV Total energy + Delta-G solvation = -2350.919966 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.39167 -35.97244 -32.57393 -31.79229 -30.41422 -29.10095 -27.11236 -24.26675 -22.98035 -22.26501 -20.74245 -19.98030 -17.13345 -16.54271 -15.24469 -14.88842 -14.06033 -13.97374 -13.73967 -13.51803 -13.21820 -12.52078 -12.42452 -12.17560 -12.10278 -11.66561 -11.50339 -11.27204 -11.00102 -10.73127 -10.67824 -10.56821 -10.43993 -10.19894 -10.04768 -9.84883 -9.44952 -9.35447 -8.41160 -8.16396 -6.47723 -5.71201 -3.30552 2.84962 3.39055 3.46378 3.47646 4.52523 5.02666 5.03802 5.10939 5.36845 5.54123 5.59733 5.72745 5.81090 5.84335 5.86153 6.06594 6.07431 6.13947 6.19460 6.28710 6.36374 6.38117 6.46000 6.51604 6.61964 6.65023 6.77565 6.85559 6.97474 7.15173 7.23061 7.35443 7.66212 7.83852 7.89844 8.59616 9.27192 9.89807 10.48832 11.27275 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.009031 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.662922 B = 3099.591335 C = 3913.774088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.586 5.586 4 C -0.258 4.258 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.156 3.844 13 C -0.106 4.106 14 C -0.103 4.103 15 C -0.177 4.177 16 C -0.084 4.084 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.081 4.081 20 H 0.034 0.966 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.032 0.968 25 H 0.254 0.746 26 H 0.094 0.906 27 H 0.020 0.980 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 1.303 10.276 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.306 5.306 4 C -0.388 4.388 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.030 3.970 13 C -0.146 4.146 14 C -0.104 4.104 15 C -0.196 4.196 16 C -0.121 4.121 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.118 4.118 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.586 1.357 10.235 11.298 hybrid contribution -0.076 0.811 -0.742 1.102 sum -4.662 2.168 9.493 10.796 Atomic orbital electron populations 1.22378 1.00217 0.98804 1.01190 1.20832 0.91674 0.87509 0.98565 1.43813 1.75991 1.08164 1.02674 1.18997 1.04512 1.21150 0.94160 0.92410 1.25171 0.94238 1.01302 0.98065 1.70010 1.03190 1.37187 1.42437 0.86432 0.76881 0.82792 0.81556 1.21323 1.21767 1.20284 1.20871 0.94648 0.96329 0.85166 1.21497 1.01017 0.99540 0.92548 1.20981 0.99084 0.94530 0.95810 1.21782 1.03830 0.95669 0.98286 1.20359 1.00640 0.98021 0.93065 1.21580 1.00765 0.95911 0.97274 1.21600 1.00432 0.95599 0.98057 1.20377 0.99847 0.98654 0.92906 0.94689 0.93730 0.93298 0.93996 0.94950 0.93644 0.88869 0.96189 0.93324 0.92046 0.88105 0.91975 0.91542 0.92143 0.92396 0.92303 0.91725 0.91620 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.21 37.16 0.38 -2.76 16 2 C 0.14 3.08 6.44 -4.04 -0.03 3.05 16 3 N -0.59 -14.91 2.43 -173.24 -0.42 -15.34 16 4 C -0.26 -7.18 9.45 -15.06 -0.14 -7.32 16 5 H 0.06 1.61 7.92 -52.49 -0.42 1.20 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.89 11.47 55.49 0.64 -25.25 16 8 Si 0.89 21.89 29.61 -169.99 -5.03 16.86 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.16 3.75 5.31 -4.04 -0.02 3.72 16 13 C -0.11 -2.20 5.55 -27.89 -0.15 -2.35 16 14 C -0.10 -1.85 5.09 -100.94 -0.51 -2.36 16 15 C -0.18 -3.10 9.37 -35.90 -0.34 -3.44 16 16 C -0.08 -1.18 6.12 -28.18 -0.17 -1.36 16 17 C -0.12 -1.46 6.01 -26.52 -0.16 -1.62 16 18 C -0.12 -1.55 6.01 -26.52 -0.16 -1.71 16 19 C -0.08 -1.21 5.80 -28.18 -0.16 -1.37 16 20 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.04 0.82 6.64 -51.93 -0.34 0.48 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 24 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 25 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.09 2.55 5.52 -51.93 -0.29 2.26 16 27 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 28 H 0.05 0.96 6.61 -51.93 -0.34 0.62 16 29 H 0.06 1.38 7.80 -51.93 -0.40 0.98 16 30 H 0.10 1.92 7.74 -52.48 -0.41 1.52 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.08 8.11 -51.92 -0.42 0.66 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -28.85 300.78 -8.63 -37.49 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.79 Total: -1.05 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.56 Total: -17.24 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.21 Total: -40.59 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.85 -8.63 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.944 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds